Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01719 AATTCTTTTGCTTAAAAAAATAAACATGTTTAATTTATAATTTTTTATTTAACGGATTTCTCAACAAAACCAAATATACACCTACAAGTACATGCTGTGTGCGTTACCAAGTTAAAGAATACCTAAACTGATTATTTTTCTTTTCGATAAGGTGAAACACTATTTTTATAGTTTGACAATTTGGATGCGTGAATGATGATGAGATGTGAGAGTTTACCCGTTAGAACACGTGGATAAATGCATTTGCGAAGCAAAAAGGGGCCACTGGTCGCTATTCAACCTGGCTCTCGTTTTTTGTGTCACTAATCACGCTTTGTTTTCTATGTTTTTGTTTATGATAAATATCATAGAGATCATCGTTCTTACCAAACCATGAAGTTCTGCAAGGCCTATCAGCAGTACGTTCAAGAGCAGGGTCAGCAGCTCCCTGCCGTTGGCTTCAAAAAGTTCAAAAAGATCATGAAAAGGTGCAGGAAATCCTCCCTACACCCTTCCTGCCCCGATCATTGCCCAGTGTGTGATGGGACCTTTTTCCCTTCCCTTCTCAACGAAATGTCAGAAATACTTGGGTGCTTTAACCAGCGTGCACAAGAATTGCTGGAAATGCATCTTGCTTCTGGCCTCAAAAAGTACTTTCTCTTGTTGAAAGCAAAATTTCAGGGGAATCATAATACTCTAATCCAAGATGGCAAAGATCTAGTCATGTATGCAATCATAAATGCCATTGCAATTCGAAAAATTTTGAAGAAATATGACAAGATTCATTATTCCAAGCAAGGGCAATTGTTCAAATCGAAAGTCCAGACCATGCACAAGGAAATTCTTCAAAGTCCTTGGCTTTGTGAGCTTATTGCTTTACACATTAACTTAAGAGAAACCAAAACCAATTCAATAGGTGTATCAGCACTGTTTGATGGATGTTATCTCACATTCAAGGATGGAAAACCATCACTTACTTGTGAGTTGTTTGATTCCATCAAAATTGATATTGACTTGACTTGCTCCATATGCTTGGATACGGTGTTTGATCCAGTTTCTCTGACTTGTGGCCACATATTCTGCTACACCTGTGCTTGCTCAGCTGCATCAGTAACTATTGTTAATGGACTCAAGGAAGCAAGTCCTAAAGAGAAATGTCCTCTATGCCGACAGAGAAAAGTTTACGAAGATGCTGTGCACTTGGAAGAATTGAATATTCTGCTAGGCCGAAGCTGCAGTGAATACTGGGAGCAAAGGCTTCAGATGGAGAGGGTAGAGAGGGTTAGGCAAGTGAAGGAGCACTGGGAAAAGCAATGTAGAGTGTTCATGGGCATCTGAAAATAAACACATGCTCACCTTCTCCTTCATTTCCTTCTCATTTTCTGATCGCATATACACCCCATTTTGGAGAGCAAGATTTTCATCACCCAACATTTAAATGCAAAACCAACTTCTCTTGGGTATGGTAGTTTTTTTGGTTGAAATGTCTTGGTATGTTAACACTTCCAATTTGTTATTCATAGCTTTGGCACCCACTCTGTTCAATGTAAATAAAGACTTCTACTTTAGAAATTATTTACCAATGGCCCTTTATTTGCTAGAGACTAAAGGCGTTTATTAATTTTGTATCTCAGCAGTAGGGCTTCTAAAAAGTTGATATTTGTATAGTTCGCACACTATGTTCAATGTAAATAAAGGCTTACCTTACGAATCTTCTTTATGTATAAATAAATTAGAATAACAATGTTAAG 1730 0.3775 MKFCKAYQQYVQEQGQQLPAVGFKKFKKIMKRCRKSSLHPSCPDHCPVCDGTFFPSLLNEMSEILGCFNQRAQELLEMHLASGLKKYFLLLKAKFQGNHNTLIQDGKDLVMYAIINAIAIRKILKKYDKIHYSKQGQLFKSKVQTMHKEILQSPWLCELIALHINLRETKTNSIGVSALFDGCYLTFKDGKPSLTCELFDSIKIDIDLTCSICLDTVFDPVSLTCGHIFCYTCACSAASVTIVNGLKEASPKEKCPLCRQRKVYEDAVHLEELNILLGRSCSEYWEQRLQMERVERVRQVKEHWEKQCRVFMGI 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01719 314 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 314 IPR033326 -
Pste4g01719 314 SUPERFAMILY RING/U-box 203 262 - -
Pste4g01719 314 SMART ring_2 210 258 IPR001841 -
Pste4g01719 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 312 IPR013083 -
Pste4g01719 314 ProSiteProfiles Zinc finger RING-type profile. 210 259 IPR001841 -
Pste4g01719 314 ProSitePatterns Zinc finger RING-type signature. 225 234 IPR017907 -
Pste4g01719 314 Pfam Zinc finger, C3HC4 type (RING finger) 207 261 - -
Pste4g01719 314 CDD RING-HC_BAH1-like 200 273 - -
Pste4g01719 314 ProSiteProfiles SPX domain profile. 1 141 IPR004331 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01719 Pste-Chr4 12859367 12862790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01719 207 259 C3H Transcription Factor Family AT4G28270 39.655 1.46e-06 46.2