Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01683 ATGAATCACTGTGTTCCAGATTTCGAAATCCAAATGGAGGAGGAAGAAGAATATCCAATTTCAATTTCAAAGAAACCTTCCACGCAAAACGACGAGATCATGGAACTGTTATGGCAAAACGGCCAGGTCGTTATGCACAGCCAAAACCAAAGACCGTTCAGAAAGCCGCCACCGCCGCCGAACACAAACGGCGGCGACGGCGTTATTCCGGCGAGGGAGATTCGATCCTCCGAAGCGGAAAGCTACGGTCACCAACACCTGTTCATACAAGAAGACGAAATGGCTTCGTGGCTCCACTATCCGATCAACGAAGATCCTCCTACCTTCGATCACAACGATTTCTGCACCGATATGCTGTATCCGCACCAGAACGCTTCCGCCAGCCAGAACCACAGCAGCGCCGCAGTGCAATCCTCCGTTCGCACTGCGGAGCTCCGGCATCCGCCTCCAAGGCCTCCGATTCCGCCTCCGAGGCGGCCGGAGCAGATACACAATTTCACAAAGCACGGCAATGCGTCGTCGAGTTCGAAGGCGGCGGCGGCGCAGCCGACGGTGGTGGATTCGTGCGACACGCCGGCCGCGACGGCTGAGCGCGCGGAAACCGGCCGCGCGAGTGTTAGTGCCGCCGCCGTAAAGGCGGCGGAGTCTGGCGGCGGAAGAGAGACCGCTACGTGCGATGTGACCGTGACGTCCTCGCCTGGCGGTTCGAGCGGCAGTGCCGAACCGGTTCAGAGAGAGCCGGTGGTGGACCGGAAGAGGAAGGGAAGGGAACCGGAGGATTCGGAGTTTCAGAGCGAGGATGTTGATTTTGAATCACCGGAAAGTAAAAAACAAGTCCGTGGTTCTACATCTACCAAGAGATCTCGTGCTGCAGAGGTCCATAATCTCTCAGAGAGGAGGCGTCGAGATAGAATTAATGAAAAGATGAAAGCCTTGCAAGAACTTATACCTCGGTGCAACAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTGAGTACTTGAAGTCACTGCAATTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCGCCAATGGGAATGGGGATTGGCATGGGTATGGCCATGGAAATGGGAATGGGAATGAACAGACCGGTAATGCCATTTCCCAACATGTTAGCTAGTTCGACTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTCCCTATGCCTCCTTTCCATATGCCCCATGTTCCCGCTCCCGATTCATCCAGAATGCAGGCCGCAAATCAATCAGATAATAATAATATGCTTAACTCACTTGGTACATTAGATCCTGATAAATCAATTATCCCAAATTTCACTGATCCTTATCAGCAGTACCTCGGTCTCCAACAAGCGCAGTTACAATTAATGCAGTCGATGAACCAACCAAATGCCAGAAAGCCTAGTACCAGTAGAGGTCAAGAGAATCCAGAAAAACATCCGTCAGCGTTGACAATTCAAATGGTGCTGCTCAGTATTGGATCGCTGGTACCAGTAACTATCACATCAGGGGATTGTTCCGGCATCTAGACAATAACGGTACAATATGCGAGAACTAACTTTTTAGCAGTTCTCAGTAGCCAGCTAATCTGTAAACGGCTAACATGTAAATTATTTTCACCCTTGAAGTATTTCTCTGTGTCCCCTTTGTTTTGCTCTGTACTTTTTACCTGACTTAAAAGCTCATACTATTTTAGAGATTATTTGTTAGTGTTATTTGTTATGGGGAGTTTAGTTCTCTATACAGTCTACAATAAACGTAGAAGATCTTTTCTGTTGTCTTGGATTTGATTCAGATTCATGTTCTGTCCCCTATTTTCTGTTGTACTATCAATTTTTTTTACTGCTAGACATTACAGCAGCATATGGATGGTGATTACTTGTGATGAGAAATAAGTGAAATAGCC 1961 0.485 MNHCVPDFEIQMEEEEEYPISISKKPSTQNDEIMELLWQNGQVVMHSQNQRPFRKPPPPPNTNGGDGVIPAREIRSSEAESYGHQHLFIQEDEMASWLHYPINEDPPTFDHNDFCTDMLYPHQNASASQNHSSAAVQSSVRTAELRHPPPRPPIPPPRRPEQIHNFTKHGNASSSSKAAAAQPTVVDSCDTPAATAERAETGRASVSAAAVKAAESGGGRETATCDVTVTSSPGGSSGSAEPVQREPVVDRKRKGREPEDSEFQSEDVDFESPESKKQVRGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPMGMGIGMGMAMEMGMGMNRPVMPFPNMLASSTLPAATAAAHLGPRFPMPPFHMPHVPAPDSSRMQAANQSDNNNMLNSLGTLDPDKSIIPNFTDPYQQYLGLQQAQLQLMQSMNQPNARKPSTSRGQENPEKHPSALTIQMVLLSIGSLVPVTITSGDCSGI 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01683 527 MobiDBLite consensus disorder prediction 146 160 - -
Pste4g01683 527 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 289 338 IPR011598 GO:0046983
Pste4g01683 527 PANTHER TRANSCRIPTION FACTOR PIF3 17 134 IPR044273 GO:0003700|GO:0006355
Pste4g01683 527 MobiDBLite consensus disorder prediction 166 182 - -
Pste4g01683 527 MobiDBLite consensus disorder prediction 125 298 - -
Pste4g01683 527 CDD bHLH_AtPIF_like 289 352 IPR047265 -
Pste4g01683 527 Coils Coil 295 315 - -
Pste4g01683 527 MobiDBLite consensus disorder prediction 245 261 - -
Pste4g01683 527 MobiDBLite consensus disorder prediction 478 498 - -
Pste4g01683 527 SMART finulus 295 344 IPR011598 GO:0046983
Pste4g01683 527 FunFam Basic helix-loop-helix transcription factor 284 347 - -
Pste4g01683 527 Pfam Helix-loop-helix DNA-binding domain 293 339 IPR011598 GO:0046983
Pste4g01683 527 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 367 IPR036638 GO:0046983
Pste4g01683 527 Gene3D - 284 347 IPR036638 GO:0046983
Pste4g01683 527 MobiDBLite consensus disorder prediction 223 239 - -
Pste4g01683 527 MobiDBLite consensus disorder prediction 125 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01683 Pste-Chr4 12630492 12636914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01683 1 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 40.659 4.06e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01683 HLH 6.5e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01683 4 12630492 12636914 Pste4g01683 4 12630492 12636914 ECH