Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01671 CTGGATCATAAGCTGTTGCAAACTAACAACTCATGCTCTATCAAGCCCCAATGGCGAACAAGTTAAGCAATGCCTTCCCAAAAACATTAACATTTCTCATCCTACACTCATTATTCTTCTCCCTAGTTTTGGCAGACGTGAGTCCCAGCACTTCTGTTTCTCCTGAAACCATATGCAAATCCACCCCAGACCCATCCTATTGCAACTCCGTGCTCCCTCCCCAAAAAGGAACCGTTTACGACTATGGCCGGTTCTCCGTCAAAAAGTCCCTATCACAAGCGACCAATTTCTTGAACCTAGTTAACAGATACCTCCAACGGCGTTCCTCTCTTTCAACCTCCGCAGTCCACGCTTTAGAAGATTGCCAAACCCTCGCCGAACTCAACATAGACTTTCTCTCCAGCTCCTTCAAAACGGTGAACAAAACAACCCGATTCTTACCCACTTCACAAGCTGACGACATCCAAACACTCCTCAGTGCCATTCTAACCAACCAACAGACCTGCCTTGATGGCCTTCAAGCCACCGCCTTCGCTTGGCGCGTCAAAAACGGACTCTCCGTTCCCCTTTCCAACGACACCAAACTCTACAGCGTCTCCCTGGCCCTCTTCACAAAGGGCTGGGTCCCCACCAACGCTAATGCCACCGCGTTTCATCCTAGCTCAAGCTCCAAACACCTCGCCTTCGGAAACGGGCGTTTGCCGCTCAAGATGTCCAGCAGAACGAGCGCCATCTACGAGTCCGTCACTCGGAGAAAACTCCTTCAGGTCACCGTGGGTGACGAGGTTAAGGTGAAAGACATTGTGACGGTGAGCAAAGATGGAAGCGGAAACTTCACCACCATCAGCGACGCCATCGCCGCCTCCCCCAACAAGACTTCCTCCTCTGCCGGCTACTTCCTCATCTATGTCACCGCCGGTGTTTACGAGGAAAACGTGTCCATTGATAAGAAAAAGACCTACTTGATGATGCTTGGAGATGGCATCAACAAGACAATCATTACTGGGAATCGCAGCGTCGTTGATGGCTGGACAACTTTTAAGTCAGCAACCTTTGCGGTGGTAGGGACAGGGTTCGTGGGTGTGAATATGAGTATCCGCAACACAGCCGGGGCAGAGAAGCACCAAGCAGTGGCCCTACGCAACGGTGCAGATTTGTCGACGTTCTACAGCTGCAGCTTCGAGGGGTACCAAGACACGCTGTACGCTCATTCCCTGCGACAATTCTACAGAGAATGCGACATCTACGGAACCGTTGATTTCATATTCGGAAACGCGGCGGCAGTGTTCCAAAACTGCAAGCTGTATCCTCGTCTCCCAATGAGTGGCCAATTCAACGCCATAACAGCACAGGGCCGAACCGACCCGAATCAGAACACTGGCACTTCCATTCAGAACTGTACAATTAAAGCAGCTGATGATTTGGCTGCCAACAGCAATGCAGCTGAAACCTATTTAGGAAGGCCTTGGAAAAATTACTCAAGGACGGTGTACATGCAGAACTTTATGGACAGCGTCATTAATCCTTCTGGGTGGCGTGAGTGGGATGGTGATTTTGCCTTGACCACTTTGTATTATGCAGAGTTTAACAACACTGGACCTGGATCTACCACTGCTAACCGAGTCACTTGGCCTGGTTACCACATCATTAATGCCACCGATGCTGCTAATTTTACCGTCTCTAACTTCTTGCTTGGAGATAACTGGCTGCCGCCCACCGGAGTCGCTTACTCCAGTACCTTGATATAGCCACTCATTCACTTTCCTGCTATTTTAAGCTCCACTTTCTACTTTCCTGCTTCCTATTATTTTTTCTAATTGCCAAAATAACCAGTCATAATTATTCTCAATCCCTGCAATTATGTAATGTAAAACCTACA 1879 0.4902 MLYQAPMANKLSNAFPKTLTFLILHSLFFSLVLADVSPSTSVSPETICKSTPDPSYCNSVLPPQKGTVYDYGRFSVKKSLSQATNFLNLVNRYLQRRSSLSTSAVHALEDCQTLAELNIDFLSSSFKTVNKTTRFLPTSQADDIQTLLSAILTNQQTCLDGLQATAFAWRVKNGLSVPLSNDTKLYSVSLALFTKGWVPTNANATAFHPSSSSKHLAFGNGRLPLKMSSRTSAIYESVTRRKLLQVTVGDEVKVKDIVTVSKDGSGNFTTISDAIAASPNKTSSSAGYFLIYVTAGVYEENVSIDKKKTYLMMLGDGINKTIITGNRSVVDGWTTFKSATFAVVGTGFVGVNMSIRNTAGAEKHQAVALRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAAVFQNCKLYPRLPMSGQFNAITAQGRTDPNQNTGTSIQNCTIKAADDLAANSNAAETYLGRPWKNYSRTVYMQNFMDSVINPSGWREWDGDFALTTLYYAEFNNTGPGSTTANRVTWPGYHIINATDAANFTVSNFLLGDNWLPPTGVAYSSTLI 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01671 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Pste4g01671 571 SMART PMEI_2 39 192 IPR006501 GO:0004857
Pste4g01671 571 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
Pste4g01671 571 FunFam Pectinesterase 45 195 - -
Pste4g01671 571 Gene3D - 251 570 IPR012334 -
Pste4g01671 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 195 IPR035513 -
Pste4g01671 571 Pfam Plant invertase/pectin methylesterase inhibitor 45 192 IPR006501 GO:0004857
Pste4g01671 571 NCBIfam pectinesterase inhibitor domain 22 194 IPR006501 GO:0004857
Pste4g01671 571 Pfam Pectinesterase 258 556 IPR000070 GO:0030599|GO:0042545
Pste4g01671 571 FunFam Pectinesterase 251 570 - -
Pste4g01671 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 45 195 IPR035513 -
Pste4g01671 571 CDD PMEI-like_3 46 197 - -
Pste4g01671 571 PANTHER PECTINESTERASE 32 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01671 Pste-Chr4 12511284 12513439 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01671 22 571 Carbohydrate Esterase AT4G02330 62.610 0.0 723