Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01655 AAACATAATACCATGCAGCTTACACTTTAGGCCTTCACTCACCAGCGTCACCAAAATCACCCGTGCGAATAGCTTGTTCACCAACCACTCCGCATTCGGTGGTTTCACCAGATCCGATTCCCGATGGCGGCGGCGCGTCGGCTGCGTGATCTCCAGTCGCAGGCGGCGAACAAGATCTGCGTCGACTGCTCCCAGAAGAACCCGCAGTGGGCCTCCGTCTCGTACGGCGTTTTCATGTGTCTCGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGACTCGTGGTCCGACCTCCAGATCAAGAAAATGGAAGCCGGCGGCAACGACAAGCTCAATGCGTTCCTCGCTCAGTATTCAATCCCTAAGGAAACCGAAATCGTCGCCAAATACAACACCAACGCCGCCGCCGTGTATCGCGACCGGATCCAGGCCCTCGCCGAGGGCCGGCCGTGGCGCGATCCGCCGGTTGTTAGGGAGAATCTCGCCGCCAGCAAGGGGAAGCCGCCGCGGGCGCAGCGGAGCAACGACGGCGGAGGCTGGGATGATTGGGATAACGAGGCGAGTTCGGTGGACTTGCGGAGCAAGTCCACGGGCGATTTCAGGAGCTTGAACGGCGGCGGCGCGCCGCCGCGTTCGCGATCGACGGAGGATATTTACACCCGGTCGGAGCTGGAGGCGTCGGCGGCGAATAAGGAGAGCTTCTTCGCGAAGAGGATAGCGGAGAACGAGGCGCGGCCGGAGGGGCTGCCGCCGTCGCAGGGAGGGAAGTACGTCGGATTTGGCTCCAGTCCACCGCCTCCGCGGAGAAACGATTCGCAGAACGATTATTTCTCTGTCGTTTCGCAGGGGATTGGGAAATTGTCGTTGGTTGCTGCCTCTGCGGCTCAGTCTGCGGCTAATGTTGTTCAAGCTGGCACGAAGGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCATAAGGTAAATGAAACTGTCAATGTTGTTACTCAAAAGACATCGGAGATTGGACAGAGAACTTGGGGCATAATGAAAGGCGTCATGGCTATAGCTTCCCAGAAGATCGAGGAGTACACTAAAGATGAACCAAACTGGAAGAATGATAACCGGCAACGAAATGAGAATGGTAGTAATGGCTATTATCAAGATTTTAATCAAGAGAACAAAAGCTGGAATTCGTCTACTGGAAGAGAACAATCTTCATCAGGGCAATATAAAACTCACAGTTCAAGCCCTTGGGATGATTGGGACCACAATGATAAAAGGAAGGAAGAACCTGCTAAAGGATCAACTCATTCATCAGGCGGGCAGTTTAGTACCCACAACTCAAGCTCTTGGGATGATTGGGGACACACAGATTCTAAGACGAAAGAACCAGCTAAAGGATCATCTCCCCATAATAATGATGGTTGGGCTGGATGGGATGATGCCAAAGATGATGGATTTGATAATTTTTATGAAGGTGCATCTAATAAGAAAGGTGTTGGTCATAATGGGAAATCAGATAGCACTTGGGCAGAGGGAGGCTTTCGCTAAGGTCCGAACACTATGCATTACTATTGTGACTTCAATTTTAATAGCAAATCTAGATATATATATATTTTAAGTAAATACTATATCATTTGCTCAAGCTGATTCTTAATACCCTCACAATGTCTACATGAACCATGAAATAACAGTTGGGCCCAACTACAATACTTTGTTATGTTACAATCATTCCTCTTTTTAACCTGTATGCCGTCTGAAATTCATAAAATTCTAACGCTTTCTTTACCTTTTACCTGTTGACATTCAAATTATATTTAGCAGTTTTATTTTGTTGTTATTATTACTATTGTTTAATGTATGTTTTGTTCTACCGCAGATTTCAAGTACATAATTGAAACAAATTATTACTTGTTATACCTCATGGACCAGGGTTGATTGGACATTATTACCAGTTTTCATGATTGTTCCTTAAGTGAGAAAAAATACTGTAGTTTTCGCGTTGATGGCATGCAGGCCAAGCAGGGGTGCCACCAAACCAAACATGATACTCGATTGTCAGCTATAACTTTTAAGTGCTTTGTTCCATTTTAAACTCGAACACAATGTGCAAGCAGATTGATTTTGTTAAGTTTAATATATTTTCAGCAACCTTTTTTGTTTTTCTTTCTTATATTGCCTCTTTGTAATTTTTTGGTAAACTTCGTTGAACAGGTAGTATCCCAAGAATGAGCTAATAGCCTAAAGATCAATTCTTAAGAGCTTTATTGACGAGGTGTGATGAAACATTATTGTGACAAGGAAATTTCAAAAATGTTTTGAATTTGTTGCATCTTAGTTTGACTGCTTATGTTCATCATGAGATTGAATGGCACTCCCTCG 2397 0.461 MAAARRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSDLQIKKMEAGGNDKLNAFLAQYSIPKETEIVAKYNTNAAAVYRDRIQALAEGRPWRDPPVVRENLAASKGKPPRAQRSNDGGGWDDWDNEASSVDLRSKSTGDFRSLNGGGAPPRSRSTEDIYTRSELEASAANKESFFAKRIAENEARPEGLPPSQGGKYVGFGSSPPPPRRNDSQNDYFSVVSQGIGKLSLVAASAAQSAANVVQAGTKEITSKVKEGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMAIASQKIEEYTKDEPNWKNDNRQRNENGSNGYYQDFNQENKSWNSSTGREQSSSGQYKTHSSSPWDDWDHNDKRKEEPAKGSTHSSGGQFSTHNSSSWDDWGHTDSKTKEPAKGSSPHNNDGWAGWDDAKDDGFDNFYEGASNKKGVGHNGKSDSTWAEGGFR 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01655 480 Gene3D Arf GTPase activating protein 1 127 IPR038508 -
Pste4g01655 480 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Pste4g01655 480 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Pste4g01655 480 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Pste4g01655 480 MobiDBLite consensus disorder prediction 210 244 - -
Pste4g01655 480 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Pste4g01655 480 MobiDBLite consensus disorder prediction 339 379 - -
Pste4g01655 480 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Pste4g01655 480 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 403 IPR044519 GO:0005096|GO:0016192
Pste4g01655 480 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Pste4g01655 480 MobiDBLite consensus disorder prediction 417 431 - -
Pste4g01655 480 Pfam Putative GTPase activating protein for Arf 5 105 IPR001164 GO:0005096
Pste4g01655 480 MobiDBLite consensus disorder prediction 380 398 - -
Pste4g01655 480 MobiDBLite consensus disorder prediction 441 455 - -
Pste4g01655 480 CDD ArfGap_ArfGap1 3 117 - -
Pste4g01655 480 MobiDBLite consensus disorder prediction 129 186 - -
Pste4g01655 480 MobiDBLite consensus disorder prediction 329 480 - -
Pste4g01655 480 MobiDBLite consensus disorder prediction 399 416 - -
Pste4g01655 480 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01655 Pste-Chr4 12409015 12413896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01655 5 91 C2H2 Transcription Factor Family AT4G21160 50.000 1.10e-22 97.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01655 4 12409015 12413896 Pste4g01655 4 12409015 12413896 ECH
Pste5g01607 5 10275554 10281195 Pste4g01655 4 12409015 12413896 PCT