LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01651	ATGAATTATTTTGCAGGTCCCCATAATGCCTCATCAAGTATGTTAACAAGCTCCTCATCTAGCAGCAGATCTTTTGCATCCCGGAAGTCAGGTAAACGGTGGAAACGGCGGTATTATTTACAGCAGAAAGCTCGTCAAGAGCGCTTGAACAACAGTAGGAAGTGGAAAGCTATAGATCATGACCAGTTGCTGAGCAAGAAGATTCACAGAATTTCTGAACCAGAAAATCATGATAGTCTTGCTTCTGAAAGTTGTGTGGAGATTGTATCAGAGAATGGGAACATGGATGATAATAAAAAACAAATATTTTCTGAACCGGCAGTAAATGACAATGTAATTGATACTGGGGATTGTCGCACTACTGAAAGCAAAGAGGAAAAAGATGCATCCTTATGTACCTTAGAGAAGAGGCAAAGTGAACATGGTGAAGCATGTTTAGAAGTTTTGGAGTGTGTTTATAAATCAAAGAGACATTTAGATCGGGATCTTGATAATCCTAAACCATGCAAGTCTAGAAAATCAATCAGTTCTAGTTCATCATTGTCTTGCAAATACAGCAAGATTTCATTTTGTGGTATTGAGGACCATCTATCAGATGGCTTTTATGATGCAGGACGAGATCGGCCATGTATGCCTCTTGAGAGTTATGAGAAAAATCAGTGTCTTACTTCACGTGAAGTCATTGTTTTGGACAGAAGAAGGGATGAAGAATTAGATGCCGTTATGCTATCAGCTCAGGCACTGGTCTATAATTTGAAAAAGTTAAATGGTTTAAACAGACATGGGAACCAGGACGGGGTTGATAACTTGCAGACGGCATCACTGCTTGCACTCTTTGTATCAGATCATTTTGGTGGCAGTGATAAAAGTGCTATTGTAGAAAGGACACGAAAATCTGTGTCTGGTTCAAACTATAATAAGCCTTTTGTCTGTACTTGCTCAGCTGGGAGCAGCACCAGTATAAGTGCTTCAGCTGAACCAGTTGCAAATGCCATAGAAGATATCACTCTTTCTAAGATGTCGGAAAAATCTCTTCACTCTATAAAAAAAAGAAGAAATTCAGTCATAGTTCCAATTGGTTCAGTGCAGTATGGTGTATGTAGACATAGAGCTCTGCTATTTAAGTATTTATGTGATCATGTGGAGCCACCAGTTCCTTGTGAGCTTGTTAGGGGTTACCTAGATTTTTCACCACATGCCTGGAATATCGTTCTGATTAAGAGAGGTGCTACATGGGTTCGAATGCTTATTGATGCCTGTCGACCTCTTGATATAAGAGAAGAGAAAGATCCTGAATACTTTTGCAGGTACATACCTCTTAATCGAACCACAATCCCTCTATCATCTAGAGGAAGTTCAAGTCCTCATTATTCTTTACCATCTCTCACTACATGTGATGAACTTGAGGCAAAGTCTTCAACTACTTTAGTTAAATGCAAATTTGGATCAGTTGAGGCTGCTGCAAAGGTGCGTACTTTGGAAGAGCAGGGGAGTTCGGCAGACAAAATTAAAAACTTCGAATATAATTGTTTGGGAGAAATTAGAATTCTTGGTGCTTTAAAACACCCCTGCATAGTGGAAATGTATGGACACCAAATGTCATGTCAATGGTCTGTCACAGCAGATGGTAATCCTGAAAACCGTGTATTAAGATCTGCAATTTTTATGGAGTATGTGGAAGGGGGCTCCTTAAAAAACTATCTGGAGAAGCTGTCAGAAGCTGGTGAAAAACACGTACCTGTGGAGTTGGCTTTGCATATAGCCAAAGATGTCTCATGTGCTTTGTCAGAGCTGCACTCAAGACACATAATTCATCGTGACATAAAAAGTGAAAACATTCTGTTTGATTTGGATAGGAAAAGAGATGATGGAACTCCTACTGTGAAGCTCTGTGATTTTGACAGTGCAGTGCCACTAAGATCAGCTTTACATGCATGCTGTATTGCTCATGTGGGAACACCTCCTCCCTGTGTATGTGTTGGAACACCTCGGTGGATGGCTCCAGAGGTTATGCGGACTATGTATAAAAAAAGTACTTATGGATTGGAAACTGACATTTGGTCATTTGGATGTTTACTTTTGGAGATGCTGACTCTGCAAATACCATATTCTGGACTTCCTGATTCACACTTTGTTGAGAGTCTGCAGATGGGTAAACGACCACAATTAACTGATGAGTTGGAGGTATTGAGTTCAATGAATGAACCCGCAATGATTCCATCCGGTGAAGAGCTGGACAAATCAGATATATTGAAATTCCTCGTTCATTTGTTTCACAAGTGTGTGGAAGAAAATCCAAGCAAACGTCCTACAGCTGAAGAAATACATAAAATGCTGCTTACCCACACAGGTCGCTTACAAGTTTAAGATTTTAGGAAGATTTAGTTAGGTTATTGGGCCTTGCCTTGTTCCAGCGAAATATATTATCATTAGAAAATATATATTCATTCTTTTTCTTCATAAAGTGTGCTAGGGCTAATCCAAGAATAATTGTTTGTACTAGGTCCAAGTCTCCTGTGAGTTGTATCGTTTGTACATTTTCAAGGGGTTATATGCATGCGGCTCTAATTTAGTCCGATTGAGATCTTTATGTTGTAGCTAGATCTCCTTCAGATGATAAACGTTGAGACGAACATGAGTTCAACCATTCTGCAATTGTATCTGATATGATTAACTTATTGATGCCACTGAATTGAACTTTCTCATTAATTAATTGATGCCTTTGAATTGAATTCTTCTACAGTAGTGTATTATTTTTTCCCCCCGATTTTGGCACAATCAAGCTTG	2787	0.3922	MNYFAGPHNASSSMLTSSSSSSRSFASRKSGKRWKRRYYLQQKARQERLNNSRKWKAIDHDQLLSKKIHRISEPENHDSLASESCVEIVSENGNMDDNKKQIFSEPAVNDNVIDTGDCRTTESKEEKDASLCTLEKRQSEHGEACLEVLECVYKSKRHLDRDLDNPKPCKSRKSISSSSSLSCKYSKISFCGIEDHLSDGFYDAGRDRPCMPLESYEKNQCLTSREVIVLDRRRDEELDAVMLSAQALVYNLKKLNGLNRHGNQDGVDNLQTASLLALFVSDHFGGSDKSAIVERTRKSVSGSNYNKPFVCTCSAGSSTSISASAEPVANAIEDITLSKMSEKSLHSIKKRRNSVIVPIGSVQYGVCRHRALLFKYLCDHVEPPVPCELVRGYLDFSPHAWNIVLIKRGATWVRMLIDACRPLDIREEKDPEYFCRYIPLNRTTIPLSSRGSSSPHYSLPSLTTCDELEAKSSTTLVKCKFGSVEAAAKVRTLEEQGSSADKIKNFEYNCLGEIRILGALKHPCIVEMYGHQMSCQWSVTADGNPENRVLRSAIFMEYVEGGSLKNYLEKLSEAGEKHVPVELALHIAKDVSCALSELHSRHIIHRDIKSENILFDLDRKRDDGTPTVKLCDFDSAVPLRSALHACCIAHVGTPPPCVCVGTPRWMAPEVMRTMYKKSTYGLETDIWSFGCLLLEMLTLQIPYSGLPDSHFVESLQMGKRPQLTDELEVLSSMNEPAMIPSGEELDKSDILKFLVHLFHKCVEENPSKRPTAEEIHKMLLTHTGRLQV	788

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01651	788	SMART	serkin_6	466	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01651	788	PANTHER	SERINE/THREONINE-PROTEIN KINASE SBK1	42	783	-	-
	Pste4g01651	788	FunFam	Leucine-rich repeat protein kinase family protein	508	785	-	-
	Pste4g01651	788	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	603	615	IPR008271	GO:0004672\|GO:0006468
	Pste4g01651	788	ProSiteProfiles	Protein kinase domain profile.	470	779	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01651	788	MobiDBLite	consensus disorder prediction	1	27	-	-
	Pste4g01651	788	Pfam	Protein kinase domain	501	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01651	788	MobiDBLite	consensus disorder prediction	1	32	-	-
	Pste4g01651	788	SUPERFAMILY	Protein kinase-like (PK-like)	475	779	IPR011009	-
	Pste4g01651	788	Gene3D	Transferase(Phosphotransferase) domain 1	456	786	-	-
	Pste4g01651	788	Pfam	Ethylene-responsive protein kinase Le-CTR1	336	408	-	-
	Pste4g01651	788	SUPERFAMILY	Cysteine proteinases	363	421	IPR038765	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01651	Pste-Chr4	12383661	12389822	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01651	482	782	MAP Kinase Kinase Kinase	AT5G66850	27.303	4.52e-23	102

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-2	Pste4g01651		Pkinase	3e-40	CL0016