Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01649 CTTTTTTATTTTTTGGGACAGTTTCTTTTTACAAAACTCATCGCCTTCTGCTCTCTCTGCTTTCCATAAAGTTGAAATCTCAACCGCGAACCAACCCTTTCGCTTCAGTTCCTTGCCGCTCTTTCAGCTTTCGCTCTCATCGAACCAAACCCTAACACTCTCGAATCTCACTTCTTTCTTTCGAATCTCGTTAAGTGCAGTGCTCAGTGCTCTTCACCAATCTCAGATCTGTTACTCGAATACTCGATTCATGACCCCTGGAGCGCGTGTTTTGTTTTTCTTTGAATTTTAGGGATTGGATGTTCGTTCGATTTCAATTTTTATTGATGTCGTTGTTTTAGGCTGTTTTGGTGGATTCAAACAACCGTCTCAAAACTTCTTCTGAACGCGTTCATTGGATTGTTAAGTGTTTTCGTTTTTTTCCGTTGCTCTTTTAGTGTTTTTTCGTTGTGTATAACCGCGAATTGATGGAAAACTGGGTTTCTAACTGTGAATTTTGTGTGTAGGCGTTGATTTGGCACGAATCTCGAGTGGAGCTCAAGTCCGGTTCCTGTTTCTTTGTGAATGCTGTGCGGTAGTGTTGTTTTTCTGGTAGTTTCCACGTTTGGATTCCCACGGACTCTGTTCTTCGATTTTGATGGGAGAAAAAGCGGTTTGTGTGCATGCATTAGAAGGAGGAAAGAAGGAAAACAATGACGAATCTAGGACGGAACTGAAGCGTGACTACGACCAATGCGTTACTGATACTGATATTCATCAGTCTCCTAATAAGAAACAAGCAAAAGAAACTTCAAATGATGAAGTGCGCTCTGAGGTTTCTAACCCCAACGTTTCTGCAGCAGAGCATGCGCTAACTTTTCAAGATATCAGTAGCCAACCAACTGAATCCGCCAATGTTAACCATGCAGAGTGTGGGGAATTGACGTCTACTTGTTTGGAGAATTCAAGCTCCGATGAGACCTTGAGTGATGAAGCCGGTGATCAGAACAACAACAACAACAACAATAATAATAATTCTCAGAGTGAAAAGGACACGAGTAGTGCTGCAATGTCCTGTGTAGTGATGGAAATTCCCAAGCATGCGAGTTCATCTGGGATCAGGAAGATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATAGTTACCAAACACCCGCTCCTGCAAATCGTCCTACTCATTGGACTGATAACAATCGCATTGGCTTTCATGGGGATGATGAAGACTGTTTGGCAAGGGATGATTGCAATGGTGGGTCGTTAGAAAGCCCGTCTGGAATGGGATATGGTCGTGATGGAGATTTGGATGTGTACGCTCGCAATATGGAATTGAAAATGTCCAAGAAAGTAGTTCCCAACTGCTACCCTACAAATGTGAAAAAGCTTTTATCAACTGGCATCCTTGACGGAGCTGTAGTGAAATATATTTACAAACCTGGACATGTTGAGTTACAAGGGATTATTGATGGTGGTGGATATTTGTGTGGCTGTTCAATGTGCAATTACTCTAGAGTTCTTAGTGCCTATGAGTTCGAGCAGCATGCTGGAGCCAAGACTAGACATCCAAACAATCATATATTCCTAGAAAATGGAAGACCAATATATAGTATTATACAGGAAATAAAAACTGCTCCACTCAGTTTACTAGATGAGGTTATAAAGAATGTGGCGGGTTCATCTGTCAATGAGGAGTCCTTCCAGGTTTGGAAAGAGAATCTTCTACAAAGCAGTGGAAAGGCATATAAAAATTATAGCACCAAACTTCATACCAACATAAGTCAATCTGGAGAAAATACAAGCCACTTGTCCTCATTGCATGCACCCAGTCATTATGAGCAGCATATGTATATGAATCAGACAGCTGATGAATGGAAACGTGTGGCGAAAAAATCAAGCTCCTACACTTCTAACTCAGGTGTACTGCTGAAAAGAAGTGCTGATGGTTGCACCAAGAGAAGGGACAACGATTTACACAGGCTACTTTTTATGCCAAATGGGCTACCAGATGGTGCAGAGTTGGCATACTATGTCAAAGGACAGAAATTACTTGGAGGTTACAAACAGGGGAATGGTATAGTCTGTGGTTGTTGTGATACAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCTGCTAGACGTCAACCTTACCGACACATATATACTTCCAATGGATTAACACTTCATGATATAGCTCTCTCGTTGGCAAATGGTCAAAACCTTACCACTGGAGACAGTGATGATATGTGTGCAGTATGTGGAGATGGAGGAGATTTGATTCTTTGTAATGGATGCCCTAGGGCATTTCATGCAGCCTGCTTGGGTTTACAGTGTGTTCCAGACAGTGGTTGGCAATGTCTAAATTGTAGAGATAATGTTGGTAATGGACGAGAATCTTCTATTGTGAGGCCAATTATGATACGGTTGACACGGGTTGATAAAACACCAGAATTTGAAATGGGTGGATGTGTTGTTTGCAGGGAACATGATTTCAGTGCTGGTAATTGTTTTGATGAACGAACAGTAATAATTTGTGACCAGTGTGAGAAGGAGTATCATGTTGGCTGCTTGCGCAACATTGGGCTATGTGAGTTGGAAGAGCTGCCCAAGGATAAGTGGTTTTGTTGTGATGACTGCAATCGAATATATGTGGCTCTACAGAATTCAGTTTCTGCTGGAGCAGACATTATACCAACTTTGCTTTCAGAACTAATAATCAGGAAGCATGAGGAGAAGGGATTATGTACCTATGAGGTCATGAATAATATCCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAACATTTACCATTGCTTTCACAAGCTGCTGCAATTTTCCGAGAATGTTTTGATCCCATTGTTGCAGTATCTGGTCGTGATCTGATTCCTGTTATGGTCTACGGGAGAAATATTTCTGGCCAAGAGTTTGGGGGAATGTATTGCATTGTTTTAACTGTGAATTCTTTAGTAGTATCTGCTGGGCTGCTTAGGATTTTTGGCTGTAATGTTGCTGAGCTTCCACTGGTCGCTACAAGCAGAGCACATCAAGGAAAAGGCTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGCTGTCTTCTCTAAACGTAGAAAAGCTGGTGCTTCCTGCAGCAGGGGATGCCAAGTCAATTTGGACTAAGAAATTGGGCTTCCGAAAGATGAGTGAAGATCAGTTATCCAAATATCTCAGAGAGGTGCAGCTAACTCTCTTCAATAAAACTTCAATGCTGGAGAAGACAGTGCAACGGCCCATAGAATGAGTTTCATCTGGTGTTGTAACTAATTTTTGGTTATTTATTCATTTTTTAGCATCTTAGTCACTGTAACATTGCTGCTATGCTCTTGCTCTAGCCGTATTTTCTTATTGTTTTTTCTCTCGTAGTTTGGGTGGTTGTGGCATGGTTTTGGGTGGTAGCCAGCCATGTCTCCTTTTTGTACAATGTAGGGTAAAAAAGTAAGTGAAAAATAGGGAACATGGCCTAAAAGGATAGAAGTAGAGGAGTTTGAAAGAACCTGCATGCTGACCAATTTTTTATTATTAGCATGCATGTTCACTATAATTCTACTGTATTGGTTATTTGCTCCGACAAAATTGTGTACCTTTGCGGTGAATTTTATTTCATCAATCTTGGCTCTCTTTGGAA 3676 0.4119 MGEKAVCVHALEGGKKENNDESRTELKRDYDQCVTDTDIHQSPNKKQAKETSNDEVRSEVSNPNVSAAEHALTFQDISSQPTESANVNHAECGELTSTCLENSSSDETLSDEAGDQNNNNNNNNNNSQSEKDTSSAAMSCVVMEIPKHASSSGIRKITFKFSKKKEDYSYQTPAPANRPTHWTDNNRIGFHGDDEDCLARDDCNGGSLESPSGMGYGRDGDLDVYARNMELKMSKKVVPNCYPTNVKKLLSTGILDGAVVKYIYKPGHVELQGIIDGGGYLCGCSMCNYSRVLSAYEFEQHAGAKTRHPNNHIFLENGRPIYSIIQEIKTAPLSLLDEVIKNVAGSSVNEESFQVWKENLLQSSGKAYKNYSTKLHTNISQSGENTSHLSSLHAPSHYEQHMYMNQTADEWKRVAKKSSSYTSNSGVLLKRSADGCTKRRDNDLHRLLFMPNGLPDGAELAYYVKGQKLLGGYKQGNGIVCGCCDTEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLQCVPDSGWQCLNCRDNVGNGRESSIVRPIMIRLTRVDKTPEFEMGGCVVCREHDFSAGNCFDERTVIICDQCEKEYHVGCLRNIGLCELEELPKDKWFCCDDCNRIYVALQNSVSAGADIIPTLLSELIIRKHEEKGLCTYEVMNNIQWRILSGKSRYPEHLPLLSQAAAIFRECFDPIVAVSGRDLIPVMVYGRNISGQEFGGMYCIVLTVNSLVVSAGLLRIFGCNVAELPLVATSRAHQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAKSIWTKKLGFRKMSEDQLSKYLREVQLTLFNKTSMLEKTVQRPIE 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01649 884 CDD PHD1_AIRE 538 578 - -
Pste4g01649 884 ProSitePatterns Zinc finger PHD-type signature. 539 578 IPR019786 -
Pste4g01649 884 SMART PHD_3 611 669 IPR001965 -
Pste4g01649 884 SMART PHD_3 538 579 IPR001965 -
Pste4g01649 884 SUPERFAMILY FYVE/PHD zinc finger 534 582 IPR011011 -
Pste4g01649 884 MobiDBLite consensus disorder prediction 9 35 - -
Pste4g01649 884 SUPERFAMILY FYVE/PHD zinc finger 610 666 IPR011011 -
Pste4g01649 884 ProSiteProfiles Zinc finger PHD-type profile. 536 581 IPR019787 -
Pste4g01649 884 Gene3D - 760 867 - -
Pste4g01649 884 FunFam PHD zinc finger protein 760 867 - -
Pste4g01649 884 MobiDBLite consensus disorder prediction 42 56 - -
Pste4g01649 884 Pfam PHD-finger 538 579 IPR019787 -
Pste4g01649 884 MobiDBLite consensus disorder prediction 1 68 - -
Pste4g01649 884 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 526 604 - -
Pste4g01649 884 PANTHER AUTOIMMUNE REGULATOR 12 878 - -
Pste4g01649 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 586 IPR013083 -
Pste4g01649 884 Pfam Tify domain binding domain 273 327 IPR032308 -
Pste4g01649 884 Pfam Tify domain binding domain 472 521 IPR032308 -
Pste4g01649 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 671 IPR013083 -
Pste4g01649 884 MobiDBLite consensus disorder prediction 100 136 - -
Pste4g01649 884 ProSitePatterns Zinc finger PHD-type signature. 612 668 IPR019786 -
Pste4g01649 884 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 763 854 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01649 Pste-Chr4 12379839 12390505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01649 1 879 PHD Transcription Factor Family AT3G53680 52.667 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste4g01649 TDBD 6.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01649 4 12379839 12390505 Pste4g01649 4 12379839 12390505 ECH