Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01648 GAAGGTTCCTAATGTATCTGTCACGCACTCCCCATCAAATTTCCCCAACTACATAAGCACTCCACCCTCCATTTTCTCTCACGTCCTATCACTCTCTCATAACCTTCTCCATAACTTGTCACAACTCTCCACTCCTACTCACAAAAACCCATTTCCAAAATAAAACCTTTCTTTCCTCACTCATCATGTGTGGCGGTGCCATCATCGCTGACTTCATACCCCGCCGTGGAGGCCGCCGCCTCACGGCCTCCGAGATTTGGCCCAACTCCTTCGGCAAAGACGACGACTTTGATTTCGATTACTCCCACATTGCTAATCAACAATCTTCCACTCTCAAGAGGTCCCAACCTCCTAAAGCAAGCGAGCAAGTTGAGAATAAGCCGGTGAAGAGGCAGAGGAAGAATCTCTACAGAGGGATTCGACAGCGTCCTTGGGGGAAATGGGCCGCGGAGATTCGCGATCCAAGAAAAGGGGTTCGCGTCTGGTTGGGTACTTTCAACACTGCGGAAGAAGCTGCAAGAGCGTACGATCGTGAAGCTAGAAAAATCCGCGGCAAAAAGGCCAAGGTGAATTTCCCCAACGAGGATGACGAGTATTCCATTCAAGCTCGTAATTCAATTCCACCCGTTCCCTTTGCGCCACAAAACCCTCTCCTGTATCAGCAACAGTACCGCTGCGATCTCAATAATTCCCCTAGAAACCTCAATTTCGAGTTCGGTTACGATCTGAACCACACGGGGGCATTTTCGTCCCATGTGGAAGCTGTCAACGCTGACTCCGTTGCTGTCTCCGGCGACGAAAATTCAGAGTTAGCGTCGGGTTCAGAGGGTGCTTATTCGACAACGGAGTTCATGGAGTCCACTCAGAACGGGAACAGTTATTTGGGTGGCACGGTAATGGCGAAAAAAGAGACAGAAGTGATTGATGCTAAAGATGGGCAGAACACAGTGCAGGAGCTTTCTGAGGAACTGATGGCGTACGAGAATTACATGAAGTTTTATCAGCTTCCCTACTATGATGGACAGTCCACGCCACCCAATAATGTTCAGGAAAGCGTGGTCGGGGATCTCTGGAGTTTCGATTAACGACCAATTAAGGCTTTTCTGGTTTCTCCTGATTAACGTCTTTGCATTTTAGCAGGGATATAGACAGGATTGTAAATTGCGTCAAAATGCTCTCAAGAGTTTCCAACTTTTATTTTTTCGCTAATTTCTCATTAATTTATTTGTTTCTAGAATCTAGGGCTATCATCTAGTTTTGTTGAGTTGTAATTTTTCTTTTGGTGTCATGTGGAACTGTAATTTTACTTGTTATATTCAACCGAGTTTGAATTGTAATTGCAGTTTTTGTTTGGGCGAATTTTATTCATCTATCTACGTGTTTTGG 1386 0.4574 MCGGAIIADFIPRRGGRRLTASEIWPNSFGKDDDFDFDYSHIANQQSSTLKRSQPPKASEQVENKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQARNSIPPVPFAPQNPLLYQQQYRCDLNNSPRNLNFEFGYDLNHTGAFSSHVEAVNADSVAVSGDENSELASGSEGAYSTTEFMESTQNGNSYLGGTVMAKKETEVIDAKDGQNTVQELSEELMAYENYMKFYQLPYYDGQSTPPNNVQESVVGDLWSFD 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01648 299 Pfam AP2 domain 75 123 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 MobiDBLite consensus disorder prediction 46 69 - -
Pste4g01648 299 CDD AP2 75 132 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 Gene3D AP2/ERF domain 74 132 IPR036955 GO:0003700|GO:0006355
Pste4g01648 299 FunFam Ethylene-responsive transcription factor 2 73 132 - -
Pste4g01648 299 PRINTS Ethylene responsive element binding protein signature 97 113 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 PRINTS Ethylene responsive element binding protein signature 75 86 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 SMART rav1_2 74 137 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 PANTHER DNA-BINDING DOMAIN 53 219 IPR044808 GO:0003700|GO:0009873
Pste4g01648 299 ProSiteProfiles AP2/ERF domain profile. 74 131 IPR001471 GO:0003700|GO:0006355
Pste4g01648 299 MobiDBLite consensus disorder prediction 46 60 - -
Pste4g01648 299 SUPERFAMILY DNA-binding domain 74 132 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01648 Pste-Chr4 12377698 12379157 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01648 1 132 AP2-EREBP Transcription Factor Family AT3G16770 55.474 7.16e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste4g01648 AP2 8.8e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01648 4 12377698 12379157 Pste4g01648 4 12377698 12379157 ECH