Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01642 ATTAGAAGGCCTAATGAGTTACAACGTGTGGGCTTCTACGTGGCCCAGCAGAGACCACGAAACCCTAACTCTTATGTTTCTGGTTCTACTATAGCACCGGAAAGTGGCAGAGAGAGGAAGAAGAAGATGGTGTCGTTGAAGCTTCAGAAGCGGCTCGCCGCCAGCGTACTAAAGTGCGGCAGGGGCAAGGTCTGGCTCGATCCCAACGAAGTTAATGAAATCTCCATGGCCAATTCTCGTCAAAACATCAGGAAGTTGGTTAAGGATGGTTTCATTATCCGGAAGCCAACCAAGATTCACTCTCGCTCTCGTGCCCGTCGAATGAAAGAGGCCAAGAGGAAGGGGCGCCACTCTGGTTATGGTAAGCGTAAGGGTACAAGGGAGGCAAGGCTTCCCACCAAAATCCTTTGGATGAGGAGGATGCGAGTCCTCAGACGCTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCATATGTACCACGACATGTACATGAAGGTCAAAGGTAATGTCTTCAAGAACAAGAGAGTCCTAATGGAGAGCATACACAAGTCCAAGGCTGAGAAGGCAAGAGAAAAGACCTTGTCTGATCAGTTTGAGGCGAAGCGTGCAAAGAACAAGGCTAGCAGGGAGAGGAAAATTGCACGGAGGGAGGAGCGCTTGGCCCAAGGTCCAGGACAGAGGCCATCAGCAGCACCAACTGCTACACCTGCAACAGCGTCCCAGCCAGCTCATACCGAAGAAATCCAAGAAATGAGTCACATATCCAGAGATTTGGTGGATGGCAGTTCTTTAGCTTTGCTGGCATCTTCAGTTACTGTGCTCAATATCAATGGCAAAAATACGACTTCATTGTCG 864 0.4931 IRRPNELQRVGFYVAQQRPRNPNSYVSGSTIAPESGRERKKKMVSLKLQKRLAASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGQRPSAAPTATPATASQPAHTEEIQEMSHISRDLVDGSSLALLASSVTVLNINGKNTTSLS 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01642 288 MobiDBLite consensus disorder prediction 18 40 - -
Pste4g01642 288 SMART Ribosomal_L19e_2 45 188 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pste4g01642 288 Gene3D - 99 229 - -
Pste4g01642 288 MobiDBLite consensus disorder prediction 99 121 - -
Pste4g01642 288 MobiDBLite consensus disorder prediction 186 225 - -
Pste4g01642 288 PANTHER 60S RIBOSOMAL PROTEIN L19 43 229 IPR039547 GO:0003723|GO:0003735|GO:0022625
Pste4g01642 288 MobiDBLite consensus disorder prediction 186 250 - -
Pste4g01642 288 Gene3D - 44 98 IPR015972 GO:0003735|GO:0005840|GO:0006412
Pste4g01642 288 FunFam Ribosomal protein L19 99 233 - -
Pste4g01642 288 SUPERFAMILY Ribosomal protein L19 (L19e) 45 186 IPR035970 GO:0003735|GO:0005840|GO:0006412
Pste4g01642 288 Pfam Ribosomal protein L19e 46 187 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pste4g01642 288 MobiDBLite consensus disorder prediction 99 127 - -
Pste4g01642 288 CDD Ribosomal_L19e_E 46 209 IPR033935 GO:0003735|GO:0022625
Pste4g01642 288 MobiDBLite consensus disorder prediction 231 250 - -
Pste4g01642 288 Hamap 50S ribosomal protein L19e [rpl19e]. 45 191 IPR000196 GO:0003735|GO:0005840|GO:0006412
Pste4g01642 288 ProSitePatterns Ribosomal protein L19e signature. 49 68 IPR023638 -
Pste4g01642 288 FunFam Ribosomal protein L19 43 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01642 Pste-Chr4 12360396 12362301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01642 43 244 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 87.129 1.41e-125 355