Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01627 AATTAAGAAGGGTACCTATATCAAAGTTTGAGCTCCATATTCATTCCAATATGAATCCTCATGGTCGAGTGAAGGAAGAGTTTGTAGGAGAAAGTTCTTCCTTTTTTGGCGGCTATGATCCGCAGCCAATAATGGTTGTTCCTCAACCAATTGAAGGGCTTCAAGAAACTGGTCCTCCACCATTCCTCACCAAAACATATGACATCGTTGATGATCCCTCCACAAACCATATAGTTTCCTGGAGTACAGGGAACAACAGCTTCGTTGTGTGGGATCCACAGGCATTTTCCGTAATCCTTCTCCCCAGATTCTTCAAGCACAACAATTTTTCCAGTTTTGTCAGGCAACTCAACACCTATGGGTTTAAAAAGGTGGATCCAGATAAGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGGCAAAGGATTCTCTTGAAGAACATTAGAAGGAGGAAAGCAAATCACCAATCTCATGCGATGCAGCAAGGTGTAGAGCCTTGTGTTGAGGTGGGGCAGTTTGGATTAGATGAAGAAGTTGATCGGTTGAGGCGTGACAGACAAGTTCTTATTGTAGAGTTGGTGAAACTTAGACAGCAGCAACAAAATACCAGAGCTCATCTTCAAGCAATGGAAGGAAGGCTTAAAAGAACTGAACAGAAACAGCAACAAATGATGAATTTCTTGGCCAGGGCAATGCAAAATCCCAACTTCGTGCAACAATTGGTTCGGCAAAAGGAGTGGAGAAAGGAGCTTGAGGAAGCTTTTTCCAAGAAGAGGAGGCATCTTGATCAAGGGCCTAGTAATGTTGTTGAAGTAGGTGAGTTAGGTTGTTCAGAAGAATGCTCGAGTTTTGTTAAAATTGAACCCCAAGAATACACTGACAAGGTATTGGAGTTTGAGGTACCTGATCTAGACTTTGCTTTGAATCTCGAGGAGCAAAATATTAGTGGAAGCTTAAAGAGAATGGAAGAAGATCATATTCAATTTGAAAGTAGAGATATTGATGAAGGGTTTTGGCAAGATTTGCTTAATGAAGGTATTGAAGATGAAGCTGTAGTAGATGTTGAAGATGTAGGTGTGTAT 1082 0.4122 MNPHGRVKEEFVGESSSFFGGYDPQPIMVVPQPIEGLQETGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVWDPQAFSVILLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQRILLKNIRRRKANHQSHAMQQGVEPCVEVGQFGLDEEVDRLRRDRQVLIVELVKLRQQQQNTRAHLQAMEGRLKRTEQKQQQMMNFLARAMQNPNFVQQLVRQKEWRKELEEAFSKKRRHLDQGPSNVVEVGELGCSEECSSFVKIEPQEYTDKVLEFEVPDLDFALNLEEQNISGSLKRMEEDHIQFESRDIDEGFWQDLLNEGIEDEAVVDVEDVGVY 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01627 344 Pfam HSF-type DNA-binding 45 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 ProSitePatterns HSF-type DNA-binding domain signature. 84 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 Gene3D - 37 135 IPR036388 -
Pste4g01627 344 SUPERFAMILY "Winged helix" DNA-binding domain 41 134 IPR036390 -
Pste4g01627 344 Coils Coil 162 203 - -
Pste4g01627 344 PRINTS Heat shock factor (HSF) domain signature 96 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 PRINTS Heat shock factor (HSF) domain signature 83 95 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 PRINTS Heat shock factor (HSF) domain signature 45 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 SMART hsfneu3 41 134 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste4g01627 344 FunFam Heat shock transcription factor 1 38 135 - -
Pste4g01627 344 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 31 247 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01627 Pste-Chr4 12272983 12274571 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01627 23 343 HSF AT3G22830 55.398 1.24e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste4g01627 HSF_DNA-bind 4.3e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste1g01417 1 4484329 4484745 Pste4g01627 4 12272983 12274571 PCT