LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01579	GCACGAGTGGCTCGTTGTGTCTGTACAAGGGACATGGGAAGGGCTCCTTGTTGTGAAAAAGTGGGGCTGAAGAGGGGGAGGTGGACAGCAGAGGAGGATGAGCTCTTGGCAAAATACATTCAGGCCAATGGGGAAGGCCAATGGAGATCATTGCCTAAGAATGCAGGATTACTAAGGTGCGGGAAGAGTTGTAGGCTGAGATGGATTAACTATTTGAGAGCTGACCTAAAAAGAGGGAATATTTCTGCTGAAGAGGAAAATACCATTGTTAAGTTGCACGCTTCTTTTGGCAACAGGTGGTCTTTGATAGCAAGTCAGTTACCAGGAAGAACGGACAATGAAATAAAGAATTACTGGAACTCTCACCTGAGCAGGAAAATTTACAGTTTCACGATGGTGGAGAGCGAAGGGGTGACGTCTATGGCGGTTCCTCCGAAGCGTAAAGGTGGTAGAACAAGCCGGTGGGCCATGAAGAAGAACAAAAGCTACACCCAAAAAAATGTGAAAGAGAGCTACACAGCGAAACACAGTAGTGACGGCGCAGTCCCGCCGCCATGGACTCCGTCTCTAAAGAGAGAGGGTTTGTGTAACGGCGTGACGGTCCTGGAGGGTGACGTGGCAGATGCAGGAGGGGAGGCGGGGGTGAATATGAAATGCATAGGCATGGATGAAAGTGGCGATGAGGACATCTTAGGACTGTGTCAATTAGATAGCATTAATGAGGGTTGTGGGGAGTTGGGTATTAGTGACATGTTGGAAAGCTGCCTTGCGGAAACATGTGGGGTTTGGGACTTAAGTGAAGAGAGAGAGAGGAGTGACGTGGTGGGTGAAAGTACTACTAGTGTGAATGGGGAAAGTGGAGAATGGAATTCATGCTCTTCCAATTCCATGGATCAACAACAACAGTGGGATTGGGAGAGCGTCATTGAGTTTAATAATGTTGCTCCTCCCAATTCGGAACATCAAGAAAAACTCCTCACTTGGCTTTGGGAAGACGATGATTGGGAAAGTGATGGCAACCATTTGGTAGACACAGATCCTCACATACAAAACGACATCGCTCATTGGATTCTTTCTTGATTAAACTTCCCCTTCAACTCTGTGTGTGCGCGCTCCGCCGTTTTTCTTTATCCCCTTGGAATTTGTATGCTATCATAGATTTCGAGCAGGCTTTTCGCTAGTTTGAAACGTGGATTTCATTTTTACTAGTTATACTTTTATTACTTTACAGCACATAAATAATATATATTTTTCA	1255	0.4582	MGRAPCCEKVGLKRGRWTAEEDELLAKYIQANGEGQWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEENTIVKLHASFGNRWSLIASQLPGRTDNEIKNYWNSHLSRKIYSFTMVESEGVTSMAVPPKRKGGRTSRWAMKKNKSYTQKNVKESYTAKHSSDGAVPPPWTPSLKREGLCNGVTVLEGDVADAGGEAGVNMKCIGMDESGDEDILGLCQLDSINEGCGELGISDMLESCLAETCGVWDLSEERERSDVVGESTTSVNGESGEWNSCSSNSMDQQQQWDWESVIEFNNVAPPNSEHQEKLLTWLWEDDDWESDGNHLVDTDPHIQNDIAHWILS	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01579	348	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Pste4g01579	348	CDD	SANT	16	61	IPR001005	-
	Pste4g01579	348	Gene3D	-	71	116	-	-
	Pste4g01579	348	SMART	sant	13	63	IPR001005	-
	Pste4g01579	348	SMART	sant	66	114	IPR001005	-
	Pste4g01579	348	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Pste4g01579	348	MobiDBLite	consensus disorder prediction	155	175	-	-
	Pste4g01579	348	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Pste4g01579	348	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Pste4g01579	348	MobiDBLite	consensus disorder prediction	265	284	-	-
	Pste4g01579	348	FunFam	Myb transcription factor	11	67	-	-
	Pste4g01579	348	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	158	-	-
	Pste4g01579	348	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Pste4g01579	348	FunFam	Myb transcription factor	71	116	-	-
	Pste4g01579	348	CDD	SANT	71	112	IPR001005	-
	Pste4g01579	348	MobiDBLite	consensus disorder prediction	260	284	-	-
	Pste4g01579	348	Gene3D	-	14	66	-	-
	Pste4g01579	348	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Pste4g01579	348	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01579	Pste-Chr4	11912045	11917595	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01579	1	150	MYB Transcription Factor Family	AT5G49330	68.639	3.00e-74	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste4g01579		Myb_DNA-binding	1.9e-13	CL0123