Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01566 AAATTCCCTCCCTTTCTTTTTTGCAATTAATAAATGAAAGACCCTCCATCGCTGCTACTGGTTTACAACATCAAGGCTTCCTCCACAAGTTTCTTTACCATTCATTCTGCTGCCGCTATCTTCCTTAAAATCGTTCTCTTCAATTGATGGAAGCGAGTTTCTCATCGCGAGTGTTTCGCGGGGTTTGTTTCGTTCTCCGCGGCTTTAATCCCGTCGCCGAAAGCCAGATCCGCTTCAAGCTTGTCAATGGCGGTGGAGTTGATGTAGGACGATACGGTGGAAGTTGTACGCATGTCATTGTCGATAAGATTGTTTATGATGATCCTATTTGTGTTGCTGCTAGAAATGATCGGAAGACGCTCGTCACTGCACTGTGGGTTATGTACAGACCTCCTAAAGACTTAGATGGAATACCAGGTGCAAAAGATTTGATAATGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTAAGCCGTTGGTGGCACACAAGGTTACTCATCTCATATGCTACAAATTTGAAGGAGAGAAGTATGAGCTTGCCAAGAGATTGGGTGCAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGACGGAATGGGTGCTTCTTCCCGAAGACAAGTATAACAAGAGTGGTTTTGAGCTAGAGATGATGGAGGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAAATTCTAAGCTGCGACAATCAGCAGGAAGAAATAGAAAACAAAGCCCACTTAGTTCGAAATTTGGTGTAGCTGCTACTCATGGATTGTCGAAATCAGGAGAGGCATCAAACTTGTCTGGTCCACAAGTTATGCCAATTGTCAATAATAGTGAAGACTCTTTAATCATTCCGAGAAATAAGAACAGACTTGATCAAGACTTGAGTTTTCATAATATTGATGACTCAAAGATAAGTTATCAGGCTCCTGATGTCTCTAGACATTCTATATCACGTCAGTTATCTGACAAATATATAAAGACCAGTGAGTGTAAGAATACCAATTCTCCAAAAGCACTTGGCTGCCAGGATCATGGTAATAGGGGTAAAACAAATTCATCTGTTCAGCAACCTGATCTGCGTGACGATATCTCGGAGTCTAAGTTATTAAGTGACTTGAGAGCAACTTCTGCAAGTGCTGCAGGAGTTACAAATTCAAATGAAAAGCTTAGAACTACGAGTTATTCTAAGAACCAAAAGGGATTTACTCTCCCACGAATCTTGGACGAAAGCATAGCCAGAGAAGGCAACGAGCGTGAAAACAGTAAGGTCGAAAAGGCTAGTGGGGGTGTCAAATCCACCAATGTTGAAGTTTCTGGGAAAGGAAATGATTTTGTTAAAGATAATGAGCCAGTTAGTTTATTGCCTCAGAAGAGGATAAATGAAGCTTTTACCGAATCAAAATCTAGAAAGAAGGCTTCCGTCCCATCAGCAAATGGCAAATCTGAAGGATTAAACCTGACATCTCAGGTTGATGGCGCAGCTGAAGCTAATGACACTTTTTCTATAGGCAAAGATAGTTTAAATAACACAACTACTCGCTTAGTTTCGAAACCTGCAGGCTCAACCTCTAACTCACTGGCATTTGAGGAGCCTTTCTCAAGAAATGCAAGCCTAGAATCTGCTCGATCTGATAATGCCTGTCAGAGTTCACCACAAACGGCTGTTCAGAGCTTAAGTGAGTCTGAAATTAATGGCAAGCCTGATATCACAGGTTCTGGAATGCAACAAGTTTATGGTAATGAAGCAGAGCAACTTAATGTTACTAAAAATCTTGATTCTTCATCACTGGGAAACGAAAGGTCACGTAATGTGGATCCTACTGGTTGTACTAATTTGGCTTTAAGCACTGAAGAAAGTAATAAACTGGTTGGTAAATCCCCCCGAAAGAAGTCTGTTGCCAAGAAAAAATTAGGTTCTAAACCTAAAGTCGGTGCCACGGCTAGAGAGAAAAGATTACTTTCCTTGAATAAAACTACCCTGCAAGCTGAAGGTGTAACATTTTCCAGAGAAAGCAAGGAGATTGCAACTTGTGATGCGAATGTGGATCAGGGATGTCCCCAAATCCTTGATGTTGATGAAACAACAGAGCAAGAAACAGTTAGCAAAAATGCAGAAGATGCTGGTGTCAGAACTGAGTTTTTTGACGATGAAACTGAGGCTCCAGATGACAAATGTGAAAATGAGTTAGGAATGGCACTTGATGTAGATTTGATTTATCTTTCAAAAAAGTCAGACACAGTAACAGAAGACAAGTCAGAAGGAATTTGCCCTGCAGCAAAATGTGAAGATGCAATGCCTCCTAAGAAAGGAACAAATAAAAATGAAAAACAGAAAACATCTTCACTGGCTGTAAAGGATCAGGCAAGAAAACGTCCTGCTGGTAAAGTCAAGGCCACGGTTGGCAAATATGTAGAATATGATGGTGACAGAACTGAGTTCTTGGATGATGAAATCGAGGTTCCAGATGACGAGTGTGAATACGAGTTGGGAGTGGCACTGGATGAAGAGTCTGTTCATTCTAAAAAGTCAGATACAGCAACAGCAGAGAAGTCAGAAGCAAATTGCCCTGCAACAAAATGTGATGACGCAATGCCGGCTAAGATAGGCACAAAAAAGACTGTGAAACAGAAGCCATCTTCACTCGTAGTAAAGAACCAAGCAAGAAAACGTCCTGCTGGTAAAGCGAAGGCCACAGTTGCAAAGGAATCATCGAAATTTAAAGGGATGGTATCAGGGCAGAATATTCCTAATGAGACGGGGCACGAGGCAGAGATAGAAACAGTGGAAGAAATGTCCTTTCCTGCTGATAAAAGTGACAAGATTTCAGCCGTACCAAGAAATAAGTCAGAGAATTTGGCTGAAGAGGAGAAGGAGAATAAACCAATTGATGGAGAGCAGGAACAAGTAAAGCGCAGAAGTGATGGCAATCCAACTAGTAAATCTAGTGTAAGTCTTGCAAATATCAAGTCCAGGAAATTGGGGCTCAATCCATCTACATCAGAATCTAACACGAGAGTAAAAACTGAAGCCGCATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAAGAGTTTCAACAAGTAATCAAGCGTTTAAAAGGAAGGGTTTGCCGGGATTCTCACCATTGGTCATATCAGGCTACACACTTCATAGTTCCAGACCCCTTACGCAGGACAGAGAAATTTTTTGCTGCTGCTGCATCAGGAAGGTGGATTCTTAAAACTGATTACTTAACTGCCAGTAGTCAGGCAGGAAAATTCTTGGAAGAGGAGCCTTATGAGTGGCACAAGAAAGGTTTCAGTGAGGACGGCGCTATCAATATGGAGGCTCCCAGAAAGTGGCGAATGTTGAAAGAAAGGACAGATCATGGCGCCTTCTATGGAATGCGTATTGTTGTATACGGAGATTGCATTGCCCCACCTTTGGTATCTGGAGATGGAACAATATTAGCTACCTGTCCTCCTTATACTCGCTTCCTTAGTACCGGAATAGACTATGCTGTAGTTAGCCCTGGCATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAAGTACCTTGTGTTGTAGCGGACTACTTGGTTGAGTATGTTTGTAAGCCCGGGTTCTCCCTTGAGAGACATGTGTTATATGGCACTCAGGCTTGGGCAGAGAGATCATTTGATAAACTTAAAAGTAGGGCAGAAGAGATTGTTGAAGAAATTGTTGCTCCTGAGGATTTCAGTGACATTGATGGTGATATAGTTTGCCAAGTATGTGGATCCCGCGATAGAGGAGATGTAATGCTAATTTGTGGTGATGAAAGAGGTTCAGTGGGTTGTGGAATCGGTACCCATATTGATTGCTGCGATCCTCCACTAACAGATGTTCCTGAAGATGATTGGTTTTGCCCTAAATGCAGTAGCACCAGAAATTGTTCAAACAATCCCAGTAAAAGGAGAAAAAATGTTTTAGCGTCATCTAAGTCTATCATTGTCACGTCATTTTGA 4052 0.4193 MEASFSSRVFRGVCFVLRGFNPVAESQIRFKLVNGGGVDVGRYGGSCTHVIVDKIVYDDPICVAARNDRKTLVTALWVMYRPPKDLDGIPGAKDLIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVAHKVTHLICYKFEGEKYELAKRLGAIKLVNHRWLEDCLTEWVLLPEDKYNKSGFELEMMEEEAKDSEEEAENSKLRQSAGRNRKQSPLSSKFGVAATHGLSKSGEASNLSGPQVMPIVNNSEDSLIIPRNKNRLDQDLSFHNIDDSKISYQAPDVSRHSISRQLSDKYIKTSECKNTNSPKALGCQDHGNRGKTNSSVQQPDLRDDISESKLLSDLRATSASAAGVTNSNEKLRTTSYSKNQKGFTLPRILDESIAREGNERENSKVEKASGGVKSTNVEVSGKGNDFVKDNEPVSLLPQKRINEAFTESKSRKKASVPSANGKSEGLNLTSQVDGAAEANDTFSIGKDSLNNTTTRLVSKPAGSTSNSLAFEEPFSRNASLESARSDNACQSSPQTAVQSLSESEINGKPDITGSGMQQVYGNEAEQLNVTKNLDSSSLGNERSRNVDPTGCTNLALSTEESNKLVGKSPRKKSVAKKKLGSKPKVGATAREKRLLSLNKTTLQAEGVTFSRESKEIATCDANVDQGCPQILDVDETTEQETVSKNAEDAGVRTEFFDDETEAPDDKCENELGMALDVDLIYLSKKSDTVTEDKSEGICPAAKCEDAMPPKKGTNKNEKQKTSSLAVKDQARKRPAGKVKATVGKYVEYDGDRTEFLDDEIEVPDDECEYELGVALDEESVHSKKSDTATAEKSEANCPATKCDDAMPAKIGTKKTVKQKPSSLVVKNQARKRPAGKAKATVAKESSKFKGMVSGQNIPNETGHEAEIETVEEMSFPADKSDKISAVPRNKSENLAEEEKENKPIDGEQEQVKRRSDGNPTSKSSVSLANIKSRKLGLNPSTSESNTRVKTEAACFILSGHRLQRKEFQQVIKRLKGRVCRDSHHWSYQATHFIVPDPLRRTEKFFAAAASGRWILKTDYLTASSQAGKFLEEEPYEWHKKGFSEDGAINMEAPRKWRMLKERTDHGAFYGMRIVVYGDCIAPPLVSGDGTILATCPPYTRFLSTGIDYAVVSPGMPRVDMWVQEFLKHEVPCVVADYLVEYVCKPGFSLERHVLYGTQAWAERSFDKLKSRAEEIVEEIVAPEDFSDIDGDIVCQVCGSRDRGDVMLICGDERGSVGCGIGTHIDCCDPPLTDVPEDDWFCPKCSSTRNCSNNPSKRRKNVLASSKSIIVTSF 1301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01566 1301 MobiDBLite consensus disorder prediction 439 460 - -
Pste4g01566 1301 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 7 1287 IPR044254 -
Pste4g01566 1301 SMART PHD_3 1221 1273 IPR001965 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 297 329 - -
Pste4g01566 1301 SUPERFAMILY BRCT domain 90 176 IPR036420 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 344 363 - -
Pste4g01566 1301 ProSiteProfiles BRCT domain profile. 983 1065 IPR001357 -
Pste4g01566 1301 Gene3D BRCT domain 84 211 IPR036420 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 852 871 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 380 418 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 736 763 - -
Pste4g01566 1301 CDD BRCT_TopBP1_rpt7 982 1055 - -
Pste4g01566 1301 Pfam PHD-finger 1221 1274 IPR019787 -
Pste4g01566 1301 SUPERFAMILY BRCT domain 8 79 IPR036420 -
Pste4g01566 1301 SMART BRCT_7 974 1055 IPR001357 -
Pste4g01566 1301 SMART BRCT_7 90 167 IPR001357 -
Pste4g01566 1301 SMART BRCT_7 7 85 IPR001357 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 297 330 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 902 972 - -
Pste4g01566 1301 SUPERFAMILY FYVE/PHD zinc finger 1206 1273 IPR011011 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 561 615 - -
Pste4g01566 1301 Gene3D BRCT domain 975 1093 IPR036420 -
Pste4g01566 1301 ProSiteProfiles Zinc finger PHD-type profile. 1219 1275 IPR019787 -
Pste4g01566 1301 Coils Coil 182 202 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 505 544 - -
Pste4g01566 1301 Pfam BRCA1 C Terminus (BRCT) domain 986 1050 IPR001357 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 730 766 - -
Pste4g01566 1301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1210 1297 IPR013083 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 561 591 - -
Pste4g01566 1301 ProSiteProfiles BRCT domain profile. 93 177 IPR001357 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 185 216 - -
Pste4g01566 1301 SUPERFAMILY BRCT domain 983 1068 IPR036420 -
Pste4g01566 1301 FunFam DNA topoisomerase 2-binding protein 1 975 1092 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 945 972 - -
Pste4g01566 1301 Gene3D BRCT domain 1094 1188 IPR036420 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 432 460 - -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 902 944 - -
Pste4g01566 1301 Pfam twin BRCT domain 95 159 IPR001357 -
Pste4g01566 1301 Gene3D BRCT domain 2 80 IPR036420 -
Pste4g01566 1301 MobiDBLite consensus disorder prediction 380 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01566 Pste-Chr4 11843580 11850144 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01566 925 1201 Core DNA Replication Machinery Family AT4G02110 56.849 6.19e-110 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste4g01566 BRCT 5.4e-06 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01566 4 11843580 11850144 Pste4g01566 4 11843580 11850144 ECH