Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01487 TTATGGATGTTAATAAAAGTGGGTCTGCTGTACAGACACAAGTGAAGGAACAACATAATGAAAACGAGATGGGCATCAGAAAAGGTCCATGGACGGTTGACGAGGACACCATTCTCGTCAATTACATCACCACCCACGGTGAAGGTCTAAGGAGGAATGGGAAAAGCTGCAGATTAAGGTGGCTAAACTACTTGCGGCCAGATGTGCGGCGTGGAAATATCACACTCCAAGAACAAATATTAATTCTGGAGCTTCATTCTCGGTGGGGAAATAGGTGGTCGAAGATAGCTCAGCAACTGCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGAGGACAAGAGTGATAAAACAGGCGAAGCAGCTTAAGTGCGATGTGAACAGCAAACAGTTCAGAGACACGTTGCGATACGTGTGGATGCCGCGCTTGCTGGAACGGGTTCAGCCCACATCGCAGCCGAGTGGAGTTGCGGGGTTTCTTCACCAAACCGGGTTTCAGGGTTATGAAACAGAGTGGGCCAAACCCAACCACTCTTACTCAGACTCATCATCCGTCCACTTTCAAGCTCCCTCCAATTCGGACCACAGCGATTCTTCCGGTTCGGTTCATACTATTGAAAAAGGGTCCGATCCGTGCCCTGCTTTGAATAACCATAACCACATGTTGGAACAGGGGACTGCTGACCAGTCCTTGGAAAGTTTCTGGACTGAGGAGCATATGTGGTTTTTGCAACAACTTTCTGATGACCTGGAAATCAAATCCAATTCCCTTCTA 776 0.4716 MDVNKSGSAVQTQVKEQHNENEMGIRKGPWTVDEDTILVNYITTHGEGLRRNGKSCRLRWLNYLRPDVRRGNITLQEQILILELHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDTLRYVWMPRLLERVQPTSQPSGVAGFLHQTGFQGYETEWAKPNHSYSDSSSVHFQAPSNSDHSDSSGSVHTIEKGSDPCPALNNHNHMLEQGTADQSLESFWTEEHMWFLQQLSDDLEIKSNSLL 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01487 258 Pfam Myb-like DNA-binding domain 70 113 IPR001005 -
Pste4g01487 258 CDD SANT 74 113 IPR001005 -
Pste4g01487 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Pste4g01487 258 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 196 IPR044676 GO:0003700|GO:0006355|GO:0043565
Pste4g01487 258 MobiDBLite consensus disorder prediction 1 21 - -
Pste4g01487 258 SMART sant 26 66 IPR001005 -
Pste4g01487 258 SMART sant 69 117 IPR001005 -
Pste4g01487 258 Gene3D - 27 69 - -
Pste4g01487 258 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pste4g01487 258 MobiDBLite consensus disorder prediction 179 219 - -
Pste4g01487 258 Gene3D - 74 115 - -
Pste4g01487 258 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 64 IPR017930 -
Pste4g01487 258 MobiDBLite consensus disorder prediction 1 18 - -
Pste4g01487 258 FunFam MYB transcription factor 74 137 - -
Pste4g01487 258 MobiDBLite consensus disorder prediction 179 205 - -
Pste4g01487 258 SUPERFAMILY Homeodomain-like 23 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01487 Pste-Chr4 11083194 11084200 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01487 25 150 MYB Transcription Factor Family AT1G48000 72.794 1.31e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste4g01487 Myb_DNA-binding 4.1e-13 CL0123