Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01460 TGCATTTATCACGAAATTCCGAGAATACCCCTTCCATATGTCACCCATTCAAATCTGCAATTCCATTTCTTACCACCCTCTCTTTGTCGCTCCTTCCTGTTAACAAGAGGCAACACTCTATTCTGTTTAGAACCTTCCTTTGCTTCTCTGTTGATGGAGTTTCAGAGGCGCCAAGATCAGAGCCTCTCCCAGCGGAAGGGCCAGAAGCGGAAGCTCGACGAGGAACAGCTCGACGACCGCCAGATCTCTTCGCCGCCGCCGCCGCCCACCGCCCACGAGCGCGCCTCTCTCCTCTCCGACGTCGCCGAACAGGTGAGCATCCTCGAGTCGACTTTCACGTGGAACGAAGCGGATCGATCCGCGGCCAAGCGCTCCACTCACACGCTCGCCGATCTCGCCAAGAATGAGGAAGTGGTGAACGTGATTGTTGAAGGAGGCGCGATTCCGGCCTTGGTTAAGCATCTTCAGGCTCCGCCTCTCAGTGACCGTGTCCAGAAGCCTTTGCCGTTTGAGCATGAGGTTGAGAAAGGGAGCGCTTTCGCTCTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAACGGTGCCTTAACACATCTTGTTGATCTTTTGAAGAGGCACAGGAATGGCTTAACTTCTCGTGCTATTAATAGTCTTATTCGAAGGGCTGCAGATGCTATTACTAATCTTGCTCATGAGAACAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTACTTGATTTTGCTGATGCAAAGGTGCAAAGAGCAGCTGCTGGGGCTCTGAGAACCCTGGCTTTTAAAAATGATGAAAATAAAAATCAGATTGTTGAATGCAATGCTCTTCCAACTTTGATTCTAATGCTATGTTCTGAAGATGCTGCTGTTCATTATGAAGCGGTTGGTGTGATTGGAAATTTAGTCCACTCTTCGCCTACTATAAAGAAAGAAGTTCTTCTTGCTGGAGCTTTACAGCCAGTTATTGGATTACTTAGTTCATGCTGCTCCGAAAGCCAGAGAGAGGCAGCCTTGTTGCTTGGACAATTTGCAGCAACTGATTCTGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTTCGACCTTTGATAGAGATGCTTCAGTCTCCTGACGTACAGCTCAGGGAAATGTCTGCTTTTGCATTGGGGAGATTGGCCCAGGACACTCATAACCAGGCTGGTATAGCGCACAATGGTGGCTTAGTGCCATTGCTCAAGCTTCTTGACTCGAAAAATGGGTCTTTGCAGCATAATGCTGCTTTTGCTCTTTATGGCCTAGCAGATAATGAGGATAATGTGTCCGATTTCATCAGGGTAGGTGGAGTTCAGAGACTGCAGGATGGAGAATTTATTGTTCAAGCAACTAAAGATTGTGTAGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCATGGCCGTGTCTTGAACCATTTGTTATATCTTATGCGAGTTTCAGAAAAAGGTTGTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGCTCTGCAGATGATCAGAGAAAAATTTTTATCGATCACTATGGTCTTGAGTTGCTTATTGGACTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATGCAAGTTGGCCAATAAAGCCTCCACCCTGTCTCCTGTAGATGCTGCTCCACCTTCTCCAACACCACAGGTTTATTTAGGGGAGCAGTATGTAAACAATGCTACATTGTCTGATGTAACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTAGCATCTTCTGATGCATTTCGTGCTATGTTTGATGGTGGTTACAGGGAGAAGGAGGCAAGGGACATAGAGATTCCAAATATTAGATGGGAGGTTTTTGAATTGATGATGAGATTTGTATATTGTGGATCAGTTGATGTCACTATGGATATTGCTCAAGATCTTCTTCGAGCAGCAGATCAATATCTTCTGGAAGGACTTAAGAGACTCTGTGAGTACACAATAGCACAGGATATATCGATAGAGAATGTATCAAGTATGTATGAACTTTCTGAAGCCTTCAATGCAATATCGTTGAGGCATGCATGCATCCTTTTTATCTTGGAGCAATTTGATAAATTGAGTGCAAGGCCAGGGCATTCTCTTCTGACTCAACGCATAATACCAGAGATCCGCAATTACTTTGTTAAAGCTCTTACAAAGGCCAACTCTCATAACAACAGACTGTAGCACGCACCCATTCTATTATTGACCTCTAAGTCTCTAACCGATCGTGATGTACAGAAATGTAGTAGATGTTATTGCTTGTACCAGGAAGGGGTCTCCTGTATGGTATCTAACGCCCGAGTTATGCTTCTTCTACTTCTCTTTAAATGAGATGTGGACCCTTTCTGTTTGTAATGTCATTATTATAGATATAGCAAATATAACCTTCACAAACATTTTTTTTTTCTCACGCAATGTGATGGTTATGTGACCTAACAGTTCTCTCATATGGCTACGATCAGGGAACTACCATTGTTGACATTATGATTATAGGTGTAAATAGTTTCCCCAATGTATTATATGAACAAAAAGATAGTATTCTGCTAGGAAATTGTGCTGCTGGGGTAACTTCTGCCACAGACATCAAATCCTGTCATCTGACTAGGAAGGACGTTGTAAACTATTGTTGCAATTACTTCATTTAAATATTCATATCTGCTC 2757 0.4382 CIYHEIPRIPLPYVTHSNLQFHFLPPSLCRSFLLTRGNTLFCLEPSFASLLMEFQRRQDQSLSQRKGQKRKLDEEQLDDRQISSPPPPPTAHERASLLSDVAEQVSILESTFTWNEADRSAAKRSTHTLADLAKNEEVVNVIVEGGAIPALVKHLQAPPLSDRVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDNGALTHLVDLLKRHRNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLDFADAKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLCSEDAAVHYEAVGVIGNLVHSSPTIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDVQLREMSAFALGRLAQDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQRLQDGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGCQRRVALALAHLCSADDQRKIFIDHYGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKEARDIEIPNIRWEVFELMMRFVYCGSVDVTMDIAQDLLRAADQYLLEGLKRLCEYTIAQDISIENVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGHSLLTQRIIPEIRNYFVKALTKANSHNNRL 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01460 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 200 IPR000225 GO:0005515
Pste4g01460 759 ProSiteProfiles BTB domain profile. 592 659 IPR000210 GO:0005515
Pste4g01460 759 Pfam Armadillo/beta-catenin-like repeat 280 319 IPR000225 GO:0005515
Pste4g01460 759 Pfam Armadillo/beta-catenin-like repeat 364 403 IPR000225 GO:0005515
Pste4g01460 759 Pfam Armadillo/beta-catenin-like repeat 245 277 IPR000225 GO:0005515
Pste4g01460 759 MobiDBLite consensus disorder prediction 60 93 - -
Pste4g01460 759 SUPERFAMILY POZ domain 584 686 IPR011333 -
Pste4g01460 759 Gene3D - 469 574 IPR011989 -
Pste4g01460 759 SMART BTB_4 592 689 IPR000210 GO:0005515
Pste4g01460 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 199 249 IPR000225 GO:0005515
Pste4g01460 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 458 IPR000225 GO:0005515
Pste4g01460 759 FunFam Armadillo/beta-catenin repeat family protein 583 727 - -
Pste4g01460 759 CDD BTB_POZ_ARIA_plant 579 694 - -
Pste4g01460 759 MobiDBLite consensus disorder prediction 60 80 - -
Pste4g01460 759 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 52 754 IPR044282 -
Pste4g01460 759 Pfam BTB/POZ domain 585 687 IPR000210 GO:0005515
Pste4g01460 759 Gene3D - 90 258 IPR011989 -
Pste4g01460 759 Gene3D - 259 465 IPR011989 -
Pste4g01460 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 364 404 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 405 445 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 188 236 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 280 320 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 322 362 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 238 278 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 520 560 IPR000225 GO:0005515
Pste4g01460 759 SMART arm_5 135 187 IPR000225 GO:0005515
Pste4g01460 759 SUPERFAMILY ARM repeat 490 669 IPR016024 -
Pste4g01460 759 SUPERFAMILY ARM repeat 116 463 IPR016024 -
Pste4g01460 759 Gene3D Potassium Channel Kv1.1; Chain A 575 718 IPR011333 -
Pste4g01460 759 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 249 284 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01460 Pste-Chr4 10882055 10890004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01460 251 559 U-box Gene Family AT3G46510 25.161 6.00e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pste4g01460 BTB 6.6e-25 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01460 4 10882055 10890004 Pste4g01460 4 10882055 10890004 ECH
Pste1g01021 1 3255555 3271096 Pste4g01460 4 10882055 10890004 PCT