Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01455 GGCGAAGGGAGGGTTTTGTCTCGCGGAGTAAACACAAGAAAAGGCGTGATAGAGTGCGTGTTTTTGTCTGTGTTGTGAGAGTCACACAGAGTAATTGGGAATTTCAAATATTGGTTAAGAAAAAAAAAAAGAATAAGGGACCGTTGGGACTTGGGACTTGGGACTTGGGACGCTGGCGCCATGGAGATGATGGAGAATGAGAATGAGAATGAGAATGAGTGGCACGCCAAGACACTCATCTGTGCCCTCAACCTTCTCTCCCGCGACCTCCCTCTCCCTCCTCACATCCTCAACTCCGTCTCTTCCATCTACCGCTTCTATGGCCATGGAGGCAATTCTGGCGACGATTTGCTAACGGATCTTGAAGATGCACTGTCGAACCAGCGACCCAAGTGTTTGTCAGGTTTCACGTTGGAGGAAGCGTGGCAAAATCGGTATCGGAGTCAGATTCAGCATAGGTTAAATGATCTTCAAGAATTGCCTTCAAGCAGGGGAGAGGACCTGCAGACAAAGTGCTTGCTTGAACTTTATGGAATAAAGCTGGCAGAGTTGCAGATGAAGGTCCGGTCTGATGTTAGTTCTGAATACTGGCTCAATGCTAAGTGTGCATATCCTGACAGGCAATTGTTTGATTGGGGTATGATGAGGTTGCGCCGTCCTTTGTATGGTGTTGGAGATCCATTTGCCATGGACGCTGATGACCAATTAAGGAAGAAACGGGAGGCTGAGAGACTGTCAAGATTAGAGGAAAAGGAGAAAAATCACATAGAGACTAGAACAAGAAAATTTTTTGCGGAAATACTCAATACTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTATGAAGAGGAGAAAACAAAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCAACACGAGCAGAGAAATTGAGATTTCAAGCATTAAAGGCTGATGATCAAGAAGCCTACATGAGAATGGTGAAAGAGAGTAAGAATGAGAGATTAACTTTGCTTCTAGAAGAAACGAATAAACTACTAGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACAACAAACATTCAGATGGTATTGAACCCTTGGAAGATTCTGAAGCTGATTTACCAGAATCATATCCTTTAAAGAATGGAGTTTCTAAGGAATCACCTCTTGATGAAGATATAGATACTATTGATTCTGATCATAATGGTGATTCTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTTACTGAACAACCGTCTATTCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAGGGGCTCCAATGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAGACAATACAAACTATTTCTCTGATAGCATATCTTATGGAACACAAGGGTGTTAATGGTCCCCACTTGATTGTTGCTCCAAAGGCTGTTCTGCCGAATTGGGTCAATGAGTTCACAACATGGGTTCCTAGCATCACAGCTATTCTTTATGATGGACGGCTGGATGAGAGGAAGGCAATGAAAGAAGAGTTATCGGGGGAGGGGAAATTTAATGTTCTATTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTCAAGAAAATTCCATGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAAAATCATGAGTCTGCTCTAGCAAGAACCTTGGACAATGGTTATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTTTGCAGGAGTTGTGGTCTTTGCTTAATTTTCTCCTTCCAAACATTTTTAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCCCCCTTTGCAGACCGAGTTGATGTCTCTCTCACGGATGAGGAACAACTATTGATCATCCGCCGTTTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAAGATGAAGTGGAAAAATTTCTTCCGGGGAAGTCTCAGGTGATACTGAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAATGGTTCTGGAAAATCAAAAAGTCTACAAAACTTAACAATGCAGCTCAGGAAGTGTTGTAACCATCCCTACCTCTTCGTAGGAGAATATGATATGTATAGACGTAAAGAGGAGATTGTCAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTTATGGACATTCTCGAAATCTATTTGCGACTTCATGATTTTAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGAAATCTTCTGCGAAAATTTAATGCTCCTGACTCCCCATACTTTATGTTTCTTTTGAGCACCCGTGCTGGAGGTCTTGGCTTGAACTTACAAACAGCGGATACTGTTATAATCTTTGATAGTGATTGGAACCCACAAATGGATCAACAAGCCGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTCAGGGTTTTTGTGTTGGTTAGTGTAGGATCAATTGAAGAGGTGATTTTAGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATACAGGCAGGACTTTTCAACACAACTTCAACAGCCCAGGACAGAAGAGAAATGTTAGAAGAGATTATGCGTAGAGGTACAAGCTCACTTGGGACAGATGTACCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGACGAAGAGAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAAGAGCATGAATTGCCAGATTGGGTGTATACTCCAATTAACAAGGATGATAAGGCCAAAGATTTCAACAGTGGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATACGCAGATACATTAAGTGATCTGCAATGGATGAAGGCTGTAGAGAATGGGGAAGACATATCAAAGTTTTCAGCTAAAGGAAAAAGAAGAGAACTCTCATCCGACAGGATTGCACAAACTAGTGATAATACAGGAGCAGAAGAAAGTCTAGAGTTGAGGACGGAAAATTTTGCCTTGGCAAATGAGGGAACAAGTGAAGATAGTTTCCATGTGACTCCTTCCTCAAAGAGATTCAAGCCTGACGGAACAAACTTCCTGAAACATACATACGAGGATGTTGGAAGCGGTTTGAACCACCATTTATTATCATGGAATACTCACAAAAAGAAGAGGTCAAGCTTTCTTGGCCAGGGTTCATTATCTGATAGTAGAGGGCATTCTTCAAATGGAAGACCAAACTGGAACTGACTTGAGTTTAATTAGACATGGCCTATGGGTGCCAGAATTTTGCACAACTATTGAATGTGATTCTGCATGATGCTCTTACAACAGAAAATGGTAAGGAACTTTCTTGTATTATGCTGGAGTTTGCTCTTCAAGTATGCAACATTCATATTAACCTTAAAAATTAATGAAAGAAAATATTCAA 3601 0.4138 MEMMENENENENEWHAKTLICALNLLSRDLPLPPHILNSVSSIYRFYGHGGNSGDDLLTDLEDALSNQRPKCLSGFTLEEAWQNRYRSQIQHRLNDLQELPSSRGEDLQTKCLLELYGIKLAELQMKVRSDVSSEYWLNAKCAYPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKREAERLSRLEEKEKNHIETRTRKFFAEILNTVREFQLQIQASMKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDNKHSDGIEPLEDSEADLPESYPLKNGVSKESPLDEDIDTIDSDHNGDSSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVNGPHLIVAPKAVLPNWVNEFTTWVPSITAILYDGRLDERKAMKEELSGEGKFNVLLTHYDLIMRDKAFLKKIPWHYLIVDEGHRLKNHESALARTLDNGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYRRKEEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGNLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTSSLGTDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYTPINKDDKAKDFNSGVTGKRKRKEVVYADTLSDLQWMKAVENGEDISKFSAKGKRRELSSDRIAQTSDNTGAEESLELRTENFALANEGTSEDSFHVTPSSKRFKPDGTNFLKHTYEDVGSGLNHHLLSWNTHKKKRSSFLGQGSLSDSRGHSSNGRPNWN 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01455 1079 Gene3D - 347 602 IPR038718 -
Pste4g01455 1079 PANTHER SNF2/RAD54 HELICASE FAMILY 141 973 - -
Pste4g01455 1079 Pfam Helicase conserved C-terminal domain 689 802 IPR001650 -
Pste4g01455 1079 Coils Coil 178 198 - -
Pste4g01455 1079 MobiDBLite consensus disorder prediction 295 349 - -
Pste4g01455 1079 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 390 556 IPR014001 -
Pste4g01455 1079 MobiDBLite consensus disorder prediction 1057 1079 - -
Pste4g01455 1079 FunFam Chromatin structure-remodeling complex protein SYD 369 612 - -
Pste4g01455 1079 Pfam SNF2-related domain 381 669 IPR000330 GO:0005524|GO:0140658
Pste4g01455 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 856 IPR027417 -
Pste4g01455 1079 SMART helicmild6 718 802 IPR001650 -
Pste4g01455 1079 SMART ultradead3 374 567 IPR014001 -
Pste4g01455 1079 Pfam Snf2-ATP coupling, chromatin remodelling complex 896 955 IPR029295 GO:0042393
Pste4g01455 1079 FunFam Probable ATP-dependent DNA helicase CHR12 609 908 - -
Pste4g01455 1079 Gene3D - 609 909 IPR027417 -
Pste4g01455 1079 SMART SnAC_2 895 955 IPR029295 GO:0042393
Pste4g01455 1079 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 859 IPR001650 -
Pste4g01455 1079 Coils Coil 893 913 - -
Pste4g01455 1079 CDD SF2_C_SNF 680 813 - -
Pste4g01455 1079 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 603 IPR027417 -
Pste4g01455 1079 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01455 Pste-Chr4 10841987 10851058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01455 360 829 RAD5 or RAD16-like Gene Family AT1G02670 27.046 1.20e-34 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste4g01455 SNF2_N 3.9e-68 CL0023