LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01444	ACAGTGTCCAGCGAGCGAGACTCCATAATTTTGAAAAACTAATTCATCATCTCCTTCCTTCAAAATTTGCATTCCACAGCACACTCAGCAAACCCTAACCAAAATATGCAGGACTTTTTGGGCTCCCTTCGCCGCTCCCTGGTTTTCCGACCCGGAGGGGACGATCGACCATTCGCCGGAATCGCCGACAAGCTTGGCTCCGCCATTCGCAAATCTCGAATCTCACTCAAACCTCCTCCTCCTCCGATACGGTGGCGCAAGGGCGAGTTAATTGGCTCCGGCGCCTTCGGTCGCGTCTACATGGGAATGAATCTCGACTCCGGGGAGCTTATTGCCATCAAACAGGTTTTAATCGCACCTGGTTTCGCTTCCAAGGAGAACACACAGGCTAATATTCGGGAGCTCGAAGAAGAAGTCAAGCTTCTCAAGAATCTTAAGCATCCAAATATTGTTAGATACCTGGGAACTGCTAGAGAGGAGGATTCCTTAAATATTCTGCTGGAGTTTGTATCTGGTGGATCTATCTCATCGCTCTTGGGGAAATTTGGATCCTTCCCTGAATCCGTTATAAAAATGTATACAAAACAGCTTTTACTGGGCCTTGAATATCTTCACAGTAATGGGATTATTCACAGGGATATCAAGGGTCCCAACATTCTAGTTGATAACAAAGGGTGCATTAAACTCGCAGACTTCGGTGCATCCAAGAAAGTTGTTGAACTGGCTACCATCAATGGTGCAAAGTCAATGAAGGGTACACCACATTGGATGTCTCCTGAAGTTATTTTACAGACAGGACATACAATCTCTACTGATATATGGAGTGTTGCATGCACTGTGATAGAGATGGCCACAGGAAAGCCTCCATGGAGCCAGCAGTATCCCCAAGAGGTTTCAGCTATTTTCTATATCGGGACAACTAAATCTCATCCACCCATACCTGAACATCTGTCTGCTGAGGCAAAGGACTTTTTGCTGAAATGCTTCCACAAGGAACCAAATTTAAGGCCTTCTGCGTCAGAACTGCTACAGCACCCGTTCATCACCTGTGACTATGATGGATCTCATTCAATATTACACGGTTCAATCAGGGACTCTTCAAATAAGATGGCAACATGGGGGATGAACTCTAGAAACTTCTTGGATTCTGTCCAGGGATCAACTTGCACAGGCTTAAAGGATGTTTGTCAGATGAATAGCATAAGATTCTCTACTGTATATCATAAAGCAGATTCCTACCAGAGAGCAGACAACAATGATGATGACTTGTGCCAGTTGGATGAAGATGATTTTTTGATTGATTCATCAGTAAAATCTGAATCTCTATTGGCTTCTGAAGATATGAAGATTTGCAATCCTATTTGCCAACCTGTGGATGATCGGCCTTGCAAGTTTGATGAAACCCAATATTTAGACAAAAACAGACCAAACTTGTCATTTTCAAGTGAGCCTCTAGTAACTGAAGATGAGGATGAAGTTACAGAGTCTAAAATTAGAGCCTTCTTGGACGATAAGGCCCTTGAACTGAAGAAGCTCCAAACACCTCTTTATGAAGAATTCTTTAGCATATCAAATGCAGTCATTGCTCCAGCTCCCACTGCTGTTGCAAAGAGTAAAGTTATTTCAGATGTCTCAAATGTAACATCAAAAGGCAGGTCTCCTAGTCAGGCTTGGAGACGATTCTCTATAGTTGGCAGTGCTAATGTTGCAAGTCCTGGTAGTCGTGCCCAATACCGTTCAAGGCTTAGTGGTGCTCACTGTCGGCCTTTGCAAGAAATTCAGCCATCTGAGCTTAATGAATCAAAGGAGACTCTTCATGATGCTGAGCTGGAATCATCGAGTGTAAGTTCAAGCTTCTCTGAGAGGCAAAAGAAATGGAAAGAAGAATTGGCTACTAATTTTCCATTCGTCTTGACATTTTCCTACAGGGAGAAGAGAGCGTCATGTAATTTTTGCAATGTCATCAAATTAGATGTTGCAACAAAGAGTTGGAAATATTGGTTCAGCACAAAAATGAAAAAT	2022	0.4313	MQDFLGSLRRSLVFRPGGDDRPFAGIADKLGSAIRKSRISLKPPPPPIRWRKGELIGSGAFGRVYMGMNLDSGELIAIKQVLIAPGFASKENTQANIRELEEEVKLLKNLKHPNIVRYLGTAREEDSLNILLEFVSGGSISSLLGKFGSFPESVIKMYTKQLLLGLEYLHSNGIIHRDIKGPNILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPHWMSPEVILQTGHTISTDIWSVACTVIEMATGKPPWSQQYPQEVSAIFYIGTTKSHPPIPEHLSAEAKDFLLKCFHKEPNLRPSASELLQHPFITCDYDGSHSILHGSIRDSSNKMATWGMNSRNFLDSVQGSTCTGLKDVCQMNSIRFSTVYHKADSYQRADNNDDDLCQLDEDDFLIDSSVKSESLLASEDMKICNPICQPVDDRPCKFDETQYLDKNRPNLSFSSEPLVTEDEDEVTESKIRAFLDDKALELKKLQTPLYEEFFSISNAVIAPAPTAVAKSKVISDVSNVTSKGRSPSQAWRRFSIVGSANVASPGSRAQYRSRLSGAHCRPLQEIQPSELNESKETLHDAELESSSVSSSFSERQKKWKEELATNFPFVLTFSYREKRASCNFCNVIKLDVATKSWKYWFSTKMKN	639

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01444	639	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	44	318	-	-
	Pste4g01444	639	ProSitePatterns	Protein kinases ATP-binding region signature.	56	79	IPR017441	GO:0005524
	Pste4g01444	639	Coils	Coil	90	110	-	-
	Pste4g01444	639	Pfam	Protein kinase domain	51	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01444	639	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	174	186	IPR008271	GO:0004672\|GO:0006468
	Pste4g01444	639	SUPERFAMILY	Protein kinase-like (PK-like)	49	314	IPR011009	-
	Pste4g01444	639	SMART	serkin_6	50	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01444	639	Gene3D	Transferase(Phosphotransferase) domain 1	49	341	-	-
	Pste4g01444	639	FunFam	Mitogen-activated protein kinase kinase kinase 2	49	341	-	-
	Pste4g01444	639	FunFam	Serine/threonine-protein kinase STE11	47	140	-	-
	Pste4g01444	639	CDD	STKc_MAPKKK	49	313	-	-
	Pste4g01444	639	ProSiteProfiles	Protein kinase domain profile.	50	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01444	Pste-Chr4	10758486	10768679	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01444	1	591	MAP Kinase Kinase Kinase	AT3G06030	54.874	0.0	627

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Pste4g01444		Pkinase	5.3e-71	CL0016