Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01415 ATGGGCAAGGGCAAAGCCTCTAGTTCTTCTTCCTCTTCTATCAGCAGCTGCAGGAACCCTTCCAATTCAACTGCATCCTCTCTCACACACCAAAATAGTCAAGCCCTTCGCACAGATCTTAGGCTTGGACTCAGCATTTCTGCTACTCAACATCTCGGTTCTTCTAGTTCAGGGGGGCACTGGCAACCGATGCAGCCACATCTAAGTAGTTTTTCACAAGCTACTGAAGTGAATGATTGCAGCGATCATACCAGCTTCTTTGTGAAGGTGTACATGGAAGGCATTCCAATTGGTAGAAAACTCAACTTGTTAGCTCATGATGGCTACCACCAGTTAGTAAAGACCCTTGAACAGATGTTTGACACTACTATTCTGTGGGGGACTGAGATGGATGGAGTGCAACCAGAGAGATGCCATGTTCTAACTTATGAAGATGGAGAGGGAGATTTGATTATGGTTGGGGATGTCCCTTGGGAGATGTTCTTATCATCTGTAAAGAGGTTGAAGATCACAAGGGTGGAGGCATTCGGGTGATAAATGTATACCTATGAAACAAGATTTCTATGTGATGACTTCAAATTTAGCCCTATAGAGTGAGACTCAGTATTAGTCATTATTGATCATCGAAGTGATGTATATTCTTAGTATTTTGGATATTTGTAAGGCATGAGATCACAAGAACAAGCAAAA 690 0.4261 MGKGKASSSSSSSISSCRNPSNSTASSLTHQNSQALRTDLRLGLSISATQHLGSSSSGGHWQPMQPHLSSFSQATEVNDCSDHTSFFVKVYMEGIPIGRKLNLLAHDGYHQLVKTLEQMFDTTILWGTEMDGVQPERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVEAFG 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01415 177 SUPERFAMILY CAD & PB1 domains 81 171 - -
Pste4g01415 177 Gene3D - 79 176 - -
Pste4g01415 177 MobiDBLite consensus disorder prediction 1 32 - -
Pste4g01415 177 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 37 172 IPR003311 GO:0005634|GO:0006355
Pste4g01415 177 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Pste4g01415 177 ProSiteProfiles PB1 domain profile. 85 175 IPR000270 GO:0005515
Pste4g01415 177 Pfam AUX/IAA family 77 172 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01415 Pste-Chr4 10591119 10592223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01415 89 170 B3 DNA Binding Superfamily AT4G23980 39.024 1.43e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pste4g01415 AUX_IAA 1.1e-28 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01415 4 10591119 10592223 Pste4g01415 4 10591119 10592223 ECH
Pste5g02877 5 21458961 21459738 Pste4g01415 4 10591119 10592223 PCT