Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01410 ATGACTAGAAGCTCCTCCTATCTAGATTCCATTTATGGCAAAGGTTCCCTTGAGCTGGTATGGGAAAATGGTCAACTTCACGTGCAGCAAGGAGGCTCATCATCAAGTGTCCTCACACGAATGGCTCCCTCGTGTGAGGGGTATTCAATAAAGGCAATTGATGAAAGTTCCTTCAATGCAAAAAGTGCAAGGTTAAGCTCTCTATACTCGCTCATGGACTTCCCAATTCGAAGGGACCCTTCCTTGGAGAATTCACAACCAAATTCTCATCCAAGTAATAATGATAAAAATTATTGTCATCATGCTTTAGAACGAGTGGAGGAGATTAAGAGTAGTAAGTTTGCAAAGGCTGCTTGTAGCAGCAAAGGTCCTGATCATTCCTTAGTGATAAACTCATCTGAAGGGTCACAGGGAAGGCAAAACCCTTTAGTTTCTGATGCATCAAACCTGGTTCCTAGAAGTGAGGAAACACCTCCTGATGAGCAGTCTGAAGCTATGGGTCATAACAATGCTCTTAGTATTCACGGATCTTGTGGTGAATATTTTAACCGAACCTCAGTCTCAGCAGGAGTTAGAGCAAAGGGAAAAGCTGATACGAAAAAACACTGTGATGAAGCCTTGTTAGAATCTTCTTCCCTATGCTCCCTTGGAGCCTCAAATAACAGAATTGTTTATAGCAGGAAACATGATATCGATGACTCAATATATTTAAGCGATAATGATGAAGAACCAGAAGATGTAGTGAAGGAAAAGCCTGCTCAGGAAGGCACCGGAGTCAAGAGAAATAGGAATGCAGAAGTTCATAATTTATGTGAAAGGAAGCGAAGAGATAAAATCAACAAGAGGATGCGCATGTTAAAGGAGCTCATACCCAATTGCATTAAGACGGATAAAGCTTCAATGCTTGATGATGCCATCGCATATCTAAAGACCCTAAAGCTTCAGTTACAGATGATGTCCATGGGTGCTGGATTTTGTATGCCTTTTATGATGTTACCTAATGCTGCTCATCATATGATCAACACATCCAATTTACATCAGTTGATGGGAGCTGGAATGGGGTTCAGGCCAGGCACAACCCTCCCTTGCAGCCTACCTCGGTTCCCTATTACACCTTTGCCTGGTATCACTGACAGCAGAGTTCACATGTTTGGCTTCCCTAACCAAGTGCCATCCATGCCTATTTCTCATACATCTTTCGTTCCAATGGCTGGAAATCCTTATACACAACCCTCTCTGGCAACTACCAACCTGCCACAAAACCCTGCTTCTTCCCAGTTATCTACTTTAATGGCCTCAGTCCCCAATAACTCATATCTTAGTGGACAAGCTAAATATGCAACAAAGTAAGCACCAAATAATCAGGTTTCCCTGCATCACTATCCAATAGCCATTAATTTGTATCCCACAAAGAGAAGAGAAAACGATAAAAATTAGCATATATGTCAAAGGCAATTGCTAGTTTAGAGAAAGATAGTGGGATCTCAATCTGATAATAGAATTTCAACAACTAGACACTTACAGTTCAGTTTAATGCTTTGAAGCACTATGAAAATGGACATTGGAAGCACATAAAAGTATCGTTCTTAG 1590 0.4126 MTRSSSYLDSIYGKGSLELVWENGQLHVQQGGSSSSVLTRMAPSCEGYSIKAIDESSFNAKSARLSSLYSLMDFPIRRDPSLENSQPNSHPSNNDKNYCHHALERVEEIKSSKFAKAACSSKGPDHSLVINSSEGSQGRQNPLVSDASNLVPRSEETPPDEQSEAMGHNNALSIHGSCGEYFNRTSVSAGVRAKGKADTKKHCDEALLESSSLCSLGASNNRIVYSRKHDIDDSIYLSDNDEEPEDVVKEKPAQEGTGVKRNRNAEVHNLCERKRRDKINKRMRMLKELIPNCIKTDKASMLDDAIAYLKTLKLQLQMMSMGAGFCMPFMMLPNAAHHMINTSNLHQLMGAGMGFRPGTTLPCSLPRFPITPLPGITDSRVHMFGFPNQVPSMPISHTSFVPMAGNPYTQPSLATTNLPQNPASSQLSTLMASVPNNSYLSGQAKYATK 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01410 449 MobiDBLite consensus disorder prediction 236 262 - -
Pste4g01410 449 MobiDBLite consensus disorder prediction 120 166 - -
Pste4g01410 449 Pfam Helix-loop-helix DNA-binding domain 267 312 IPR011598 GO:0046983
Pste4g01410 449 MobiDBLite consensus disorder prediction 242 262 - -
Pste4g01410 449 CDD bHLH_AtPIF_like 263 325 IPR047265 -
Pste4g01410 449 Gene3D - 259 321 IPR036638 GO:0046983
Pste4g01410 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 263 312 IPR011598 GO:0046983
Pste4g01410 449 SMART finulus 269 318 IPR011598 GO:0046983
Pste4g01410 449 MobiDBLite consensus disorder prediction 125 156 - -
Pste4g01410 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 261 332 IPR036638 GO:0046983
Pste4g01410 449 PANTHER TRANSCRIPTION FACTOR PIF3 87 436 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01410 Pste-Chr4 10560678 10562792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01410 131 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 35.000 8.39e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01410 HLH 4.9e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01410 4 10560678 10562792 Pste4g01410 4 10560678 10562792 ECH
Pste5g02880 5 21481654 21484455 Pste4g01410 4 10560678 10562792 PCT