Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01398 GAAAAAAGAGTTTATCCTTTTAGTTTTAGCCTTTCAGGTACCTATGTGTGGCAGTCTTCAACTGAAGTGAGAAGCTAAACTCGAGTGTCATAACTCATAACGAGCACAGGTTGATAGACTCGGAAGTGTTGACCAGTTTTGTCACGAGAAAAGCTATCCAACTAACTTAAACTTGTTAGTCATGACATCTTCATTCTCAACACAGTTGGTCCAAAGTCAGAACCTACCTCCTCGTTTTCTTCATCATGTCCAGGGAAATTGGAGTGTGTCAAAGGTTCCAACAACACATATGGTCTGTAGCAGTACCAAATCACAACTTGGTTACAGTAAAACGTTGGCATCGAAATCTCATTATGCTGCGAGGATTTCTGTCTCACGACAATCTGAAGCAAAATCAAACACATATAGGAGAATGACATGTACTAATGCTAAGGAAAATGTTCTACAGCTGCAAGCCAAAGTGACAAACAAGTGTTTCTTTGATGTAGAAATTGGGGGAGAGAAAGGATATGGCTACAAAGGGTGCTACTTCCATCGTATAATCAAAGATTTCATGGTTCAGGGAGGGGACTTCACTGAAGGAAATGGAACAGGTGGAATCAGTATCTATGGTGATAGATTTGAAGATGAAAATTTTGCCTTAAAGCATGTTGGACCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTCTTTATCTGCACTGTGCAGACTCCATGGTTAGACAATCGACATGTTGTGTTTGGACATGTCATCGATGGATTGGATGTTTTGAGGACACTTGAATCGCAGGAGACAAGCAAGTTTGATAGCCCTCGGAAGTCATGCAAAATTGCTAATTCTGGAGAACTGCCTGTAGACAGTTGATCTTTACACTGAAGTGCAGTACAATTTTCTGACTATCAATTACAATTTTTGGTTGAGAGAGTGCAGGGGGAGGAAGTGTATGGATATCTAAAATGTTTATTTGAATTATCATTGATCTCCGCTGAAGGAAAATTTGAATGTCACTACTAGTGCATTTAGTGAATTATTGTTCTGAGAGATACATCCCCTTATTACCTGACTGTACGTAAACCCTCATTTAGAATAAGTAGATGTTTATTCTCTCACAAATTTCTAGTTCTATGGTTTGCATTTACAAGTTTCCCATCCATTTCATATTTTCATGATGCTAATTGCAAG 1201 0.3905 MTSSFSTQLVQSQNLPPRFLHHVQGNWSVSKVPTTHMVCSSTKSQLGYSKTLASKSHYAARISVSRQSEAKSNTYRRMTCTNAKENVLQLQAKVTNKCFFDVEIGGEKGYGYKGCYFHRIIKDFMVQGGDFTEGNGTGGISIYGDRFEDENFALKHVGPGVLSMANAGPNTNGSQFFICTVQTPWLDNRHVVFGHVIDGLDVLRTLESQETSKFDSPRKSCKIANSGELPVDS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01398 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 129 IPR002130 GO:0000413|GO:0003755
Pste4g01398 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 175 187 IPR002130 GO:0000413|GO:0003755
Pste4g01398 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 188 203 IPR002130 GO:0000413|GO:0003755
Pste4g01398 233 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 175 IPR002130 GO:0000413|GO:0003755
Pste4g01398 233 Gene3D - 79 233 IPR029000 -
Pste4g01398 233 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 82 226 IPR002130 GO:0000413|GO:0003755
Pste4g01398 233 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 112 129 IPR020892 GO:0003755|GO:0006457
Pste4g01398 233 SUPERFAMILY Cyclophilin-like 105 229 IPR029000 -
Pste4g01398 233 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 69 229 - -
Pste4g01398 233 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 92 229 - -
Pste4g01398 233 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 228 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01398 Pste-Chr4 10437394 10440672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01398 107 223 U-box Gene Family AT5G67530 50.000 7.84e-28 108