Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01393 CTTGTTAAAAATCAAACTCAAGAGAAAGAGTGAAAGAGAAGGGATGGAAAAGCTAGCTTTCAGTGGTCTAATAGTTCTTTTGTTGGGGTTATATGCCACGGAACTTAGAGTAGCATCAGCAGCTTGGCAGCGAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGTGGGGCATGTGGTTATGACAATCTGTACACTGATGGTTATGGAATAAAAACAGCAGCATTGAGTACTGCTTTGTATAATGATGGCAAGGCATGCGGTGGTTGCTATCAGATAGTTTGTGACGCAAGCCTAGTGCCCCAATGGTGCCTGAGGGGCACTTCCATCACAATCACTGCCACAAATTTCTGCCCTCCAAACTATGCACTTCCTAGTGACAATGGGGGTTGGTGTAATCCTCCTAGACCACACTTTGACATGTCTCAACCTGCCTTTGAGATCATCGCCAAATACAGGGCTGGGATTGTTCCAATTCTTTACAGAAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTAGCATCAATGGGAGAGACTACTTTGAACTGGTGCTTTTAAGCAACGTAGGAGGAGCAGGGGATATCTCTCGAGTTTGGATCAAAGGGTCCAAAATGAGTAACTGGGAATCCATGTCAAGGAATTGGGGGGCTAACTGGCAAAGCTTAAGCTATCTCAACGGTCAAAGCTTGTCCTTCAGAGTCCAACTCACCAATGGAAGGAGTCGCACGGCTTACAATGTGGCACCGTCCACTTGGAGATTTGGCCAGTCCTTCATCAGCAAGGTTCAGTTCTGA 811 0.4612 MEKLAFSGLIVLLLGLYATELRVASAAWQRAHATFYGGSDASGTMGGACGYDNLYTDGYGIKTAALSTALYNDGKACGGCYQIVCDASLVPQWCLRGTSITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFEIIAKYRAGIVPILYRKVGCKRTGGIRFSINGRDYFELVLLSNVGGAGDISRVWIKGSKMSNWESMSRNWGANWQSLSYLNGQSLSFRVQLTNGRSRTAYNVAPSTWRFGQSFISKVQF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01393 255 SUPERFAMILY Barwin-like endoglucanases 22 179 IPR036908 -
Pste4g01393 255 SUPERFAMILY PHL pollen allergen 158 251 IPR036749 -
Pste4g01393 255 Gene3D - 161 255 IPR036749 -
Pste4g01393 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 161 IPR007112 -
Pste4g01393 255 Gene3D - 17 157 IPR036908 -
Pste4g01393 255 FunFam Expansin 161 255 - -
Pste4g01393 255 SMART dpbb_1 63 151 IPR007112 -
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Pste4g01393 255 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Pste4g01393 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 251 IPR007117 -
Pste4g01393 255 PANTHER EXPANSIN-A15 12 252 IPR002963 GO:0009664
Pste4g01393 255 Pfam Lytic transglycolase 63 151 IPR009009 -
Pste4g01393 255 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Pste4g01393 255 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Pste4g01393 255 Pfam Expansin C-terminal domain 162 240 IPR007117 -
Pste4g01393 255 FunFam Expansin 18 157 - -
Pste4g01393 255 CDD DPBB_EXPA_N 28 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01393 Pste-Chr4 10401709 10402772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01393 1 255 Expansin Gene Family AT4G01630 71.875 7.81e-142 396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01393 4 10401709 10402772 Pste4g01393 4 10401709 10402772 ECH
Pste5g02900 5 21709456 21710391 Pste4g01393 4 10401709 10402772 PCT