Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01388 CAGGAGGCGAGTTGGAGTTGAAGCATGGGACAGTGAGTCGAGTCTGAGAGAGGAGAGAGGAGAGAGGAGAGAGGAGAGAGGTGAGAGGTGAGAGGTTTAAAAGGGCATAGTTTGAGAAGCAAGAAAAGGTGAGTGGCCTTATCCCCTAGCCGCTTCTTTCTGACAGTATGGCTTGTATGATTCCTATCTCTTGTTCCATTTTCAAAGTCCCCTCTTTCCATCTCCTTAGAAGACCCAGCGCCCTTTCCTTCAACAGCCTTCCCGGTAACCGCAACGGCACTCTCTCTTCCGTCGTTCCTTCCGCCATTGCCACCCCGTCCCTCGTTACCCAGCAACCCTTGAAGGGCTTAACCTTAGACCACGTCACCGATGACCTCCCATTTGACCAGCTCCCCGACAACAGTCCCAGCGACCACGAACTGGACATTTCCAAGTTGCCCTTACCTTCGCCCCTCGTCCACTCCCTACTCAAACGTGGGATCACCTCCCTTTTCCCCATTCAGAGAGCTGTCTTACTTCCTGCACTTCAAGGTAAAGACATCATTGCCCGTGCCAAGACCGGAACTGGCAAGACTTTAGCTTTCGGAATTCCAATTCTTAAGGGTCTCACTCGTGACTATGAACAAAGTTCTTTCAGCCGTTCTGGGAGGCTTCCTAAAGCACTCGTCCTTGCTCCTACGAGGGAGTTGGCTAAGCAAGTTGAGAAAGAGATACACGAGTCTGCACCTTACCTCGACACTGTCTGTGTTTATGGTGGTGTTTCTTATGTCACTCAGCACACTTCACTTTCACGCGGTGTTGATGTCGTCGTTGGAACGCCCGGTAGAATAATTGACCTCGTCAATGGTAACAGCCTTAAACTTTGTGAGGTTCAGCATTTCGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGACGATGTCGAACTCATTTTAGATAAGCTCCCCTCCCAGCGCCAGACCATGCTTTTTTCTGCTACCATGCCCTCTTGGGTTAAGAAACTCTCCAGAAAATACTTGAACAATCCATTGACAATTGATTTGGTTGGTGAGCAGGAAGAGAAGCTTGCCGAAGGGATCAAACTTTATGCTTTATCAGCCACTGCCACTTCAAAACGAATACTTCTTTCTGATCTTATAACTGTTTATGCAAAGGGTGGGAAGACTATTGTCTTCACGCAGACAAAAAAGGATGCTGATGAAGTATCATTGGCATTAACAAGTAGTATATCTTCTGAAGCACTGCATGGTGATATATCTCAACATCAGAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCAACTGATGTTGCAGCTCGTGGACTTGACATTCCCAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATGCGGAGACTTTTGTACATCGTTCTGGGCGTACCGGGCGTGCAGGAAAAGAGGGTACTGCCATTCTGATGTACACTAGTACCCAGAGGAGAACAGTTAGATCCCTTGAGCGTGATGTAGGCTGTAAATTTGAATTTATTAGTCCACCAGCTATGGAAGAGATTTTGGAGTCATCTGCAGAGCAAGTTGTCACTGCACTTAATAGAGTTCATCCAGAGTCTGTTCAATTTTTCACTGCGATTGCTCAAAAACTGATTGAAGAACAGGGTGCAAGTGCCCTTGCAGCTGCTCTAGCACAGCTGAGTGGATTCTCTCAACCTCCATCATGTCGGTCTCTCATCAATCATGAACAGGGATGGATTACATTGCAGCTGACTCGAGATCCAGACACTTCTGGAAGAATTTTTTCTGCAAGATCTGTAACTGGGCTTCTTTCAGGTGTTCATTATCCAGCTGCTGATGAAGTTGGAAAAATACATTTAATTGCAGATGAGAGGGTTAAAGGAGCTGTTTTTGATCTTCCGGAGGAAATTGCTAAAGAGTTACTCAACAAGGAACTGCCATCTGGAAACACTATTTCCAAAATCACCAAGTTACCTCCTTTGCAAGATGACGAACCTGCAAGTGATTTTTACGGGAAGTTTTCTGACAGAGATAGAAGTAACCGAAGAGGTTCTAGGGATGAGAGAGGTTTTAGAAATTCAAGGGGATGGGAAGGAGGCCAAGATTCTGAGAATGAGTTTGGAGGAGGTGGTAGAAGTTTCAGGACTGGCAGCAAGTTTCGAAGGGGAAATAGCAGCGGGGATGACTGGCTAATTGGAGGTAGACGATCAGGCAGGGATTCATCATCAAACAGAAGCGGGCATGGAGGGGCCTGTTTTAATTGTGGACAACGTGGCCATCGAGCATCAGATTGCCCCAAAAAACGAGACTCGTTCTAGTTTGCTCTTTTTTGGCTCTGGCACCACCTAGTCTCAGAATGGAGCTTCCAATGAATTACAGAATCGATGTTCTCTTGTTTTGTTAGCATTCTACAGAGGTCTTCTGTCTTAGGAATTTTTTGTATTCATCATTTGGATTGCGGTCTCACGATATATATATTTTTTGGGG 2511 0.4592 MACMIPISCSIFKVPSFHLLRRPSALSFNSLPGNRNGTLSSVVPSAIATPSLVTQQPLKGLTLDHVTDDLPFDQLPDNSPSDHELDISKLPLPSPLVHSLLKRGITSLFPIQRAVLLPALQGKDIIARAKTGTGKTLAFGIPILKGLTRDYEQSSFSRSGRLPKALVLAPTRELAKQVEKEIHESAPYLDTVCVYGGVSYVTQHTSLSRGVDVVVGTPGRIIDLVNGNSLKLCEVQHFVLDEADQMLAVGFEDDVELILDKLPSQRQTMLFSATMPSWVKKLSRKYLNNPLTIDLVGEQEEKLAEGIKLYALSATATSKRILLSDLITVYAKGGKTIVFTQTKKDADEVSLALTSSISSEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDAETFVHRSGRTGRAGKEGTAILMYTSTQRRTVRSLERDVGCKFEFISPPAMEEILESSAEQVVTALNRVHPESVQFFTAIAQKLIEEQGASALAAALAQLSGFSQPPSCRSLINHEQGWITLQLTRDPDTSGRIFSARSVTGLLSGVHYPAADEVGKIHLIADERVKGAVFDLPEEIAKELLNKELPSGNTISKITKLPPLQDDEPASDFYGKFSDRDRSNRRGSRDERGFRNSRGWEGGQDSENEFGGGGRSFRTGSKFRRGNSSGDDWLIGGRRSGRDSSSNRSGHGGACFNCGQRGHRASDCPKKRDSF 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01388 724 FunFam Nucleolar RNA helicase II 315 505 - -
Pste4g01388 724 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 116 293 IPR014001 -
Pste4g01388 724 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 322 482 IPR001650 -
Pste4g01388 724 SMART helicmild6 347 427 IPR001650 -
Pste4g01388 724 SMART ultradead3 104 310 IPR014001 -
Pste4g01388 724 SUPERFAMILY Retrovirus zinc finger-like domains 684 722 IPR036875 GO:0003676|GO:0008270
Pste4g01388 724 CDD DEADc 96 294 - -
Pste4g01388 724 SMART c2hcfinal6 703 719 IPR001878 GO:0003676|GO:0008270
Pste4g01388 724 MobiDBLite consensus disorder prediction 604 724 - -
Pste4g01388 724 Pfam GUCT (NUC152) domain 514 614 IPR012562 GO:0003723|GO:0004386|GO:0005524
Pste4g01388 724 Gene3D - 311 513 IPR027417 -
Pste4g01388 724 Gene3D - 86 297 IPR027417 -
Pste4g01388 724 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 79 659 - -
Pste4g01388 724 CDD GUCT_Hera 522 601 - -
Pste4g01388 724 Gene3D - 691 723 - -
Pste4g01388 724 Pfam Zinc knuckle 703 719 IPR001878 GO:0003676|GO:0008270
Pste4g01388 724 ProSiteProfiles Zinc finger CCHC-type profile. 704 719 IPR001878 GO:0003676|GO:0008270
Pste4g01388 724 Pfam DEAD/DEAH box helicase 109 282 IPR011545 GO:0003676|GO:0005524
Pste4g01388 724 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Pste4g01388 724 MobiDBLite consensus disorder prediction 621 647 - -
Pste4g01388 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 164 448 IPR027417 -
Pste4g01388 724 CDD SF2_C_DEAD 319 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01388 Pste-Chr4 10312376 10318305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01388 90 449 Eukaryotic Initiation Factors Gene Family AT1G72730 36.712 2.91e-64 218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g02914 5 21850104 21855582 Pste4g01388 4 10312376 10318305 ECH
Pste4g01388 4 10312376 10318305 Pste4g01388 4 10312376 10318305 ECH
Pste5g02914 5 21850104 21855582 Pste4g01388 4 10312376 10318305 PCT