LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01382	AAGAAATGAAATGTTGATGACACTATAAGCTGCAACACCTGTGAGAGAACAGAGGCATAAACTCTCCCATTCCCATCCCATGGCTTGGAATTCCTTCAAGCTTCTCTTTCTCTTTGTCCTGGCTAGCTTCCTCTGTTTTTCAACAAGCAAGGCCCAGGCGCCCACTTTTCTTTACCAGAATTGCTCAACCAACATAACCACTCCCAACAGCACCTTCCAAATAAACCTCAGCACCCTCCTCTCTTCACTATCTTCCAACGCCACTGCCAACAATGAATTCCACAACTCCACAGTGACGGGAACAAATTCCTCTGACACAGTCTATGGACTTTTTATGTGCAGGGGTGATATCCCATCTCAGCTGTGTGAACAGTGCGTGGTAAACGCAACACAGAAACTATCATCTGACTCAGAGTGCTCCTTGTCCAAACAGGCTGTGATCTGGTACGACGAGTGCATGGTTAGGTACTCCAACCGCTCCTTTTTCTCCACCGTGGACACAAGGCCTGCTGCTGGCCTGTGGAACACGGCCAATATCTCAAACCAGGAAAGCTTCATGCGATTGATGTTCGACACCATGAATGAAACTGCAGATGAAGCTGCTAGTTCTCCTATTGGTTCCAAGAAATACGCCACCAAACAAGCAAACATATCTGGCTTTCAGTCCCTTTATTGCCTGGCTCAGTGCACGCCCGACTTGTCACCCCAAGGTTGCAGAACTTGCCTTAATTCCACCATACAGCTCCTTCCTTGGTGCTGTGAAGGAAAACAGGGAGGGAGAATTCTCTATCCCAGCTGTAATATTAGGTACGAATTGTACCCCTTCTATCGCACCAACAACACTGCTTCCGCACCATCGCCTGCACCATCACGCTCTGTTCCTCCAACTCCAACCACTTCTTCAAACTCCGGAGCAAGTAATGGAATTTCATCGGGGACAATAGTTGCCATTGTGGTTCCAATTTCAGTTGCTGTGCTGCTATTTATTGTGGGCATTTGGATCTTATGGAAAAGAACTGGCGCAGCAAAGAGGCGTAACTCTGCACAAGACCCAAAAACTGGAACTGAGATTAGCTCCGCGGAATCCTTGAGATTTGATTTCAGCACAATTGAAGCAGTCACAAACAAATTCTCTAACGCTAACAAGCTAGGTGAAGGTGGATTTGGTGAAGTTTACAAGGGCTTGCTTCCAAGCGGACAAGAAGTGGCTGTCAAAAGACTCTCTAAAAGCTCTGGACAAGGTGGAACAGAATTTAAGAATGAAGTTGAGGTGGTTGCAAAGCTTCAACACAGAAATTTGGTGAGGCTTCTAGGATTTTGTTTGGAGGGGCAAGAAAAGATACTTGTTTACGAATTTGTAGTCAACAAAAGCCTTGACTATATTCTTTTTGGTAGGCTCACGCTCATCTTATCTGAATTCTTTGTGGTGTACATTTTACATATCTGCTTTAATTTTTAG	1459	0.4537	MAWNSFKLLFLFVLASFLCFSTSKAQAPTFLYQNCSTNITTPNSTFQINLSTLLSSLSSNATANNEFHNSTVTGTNSSDTVYGLFMCRGDIPSQLCEQCVVNATQKLSSDSECSLSKQAVIWYDECMVRYSNRSFFSTVDTRPAAGLWNTANISNQESFMRLMFDTMNETADEAASSPIGSKKYATKQANISGFQSLYCLAQCTPDLSPQGCRTCLNSTIQLLPWCCEGKQGGRILYPSCNIRYELYPFYRTNNTASAPSPAPSRSVPPTPTTSSNSGASNGISSGTIVAIVVPISVAVLLFIVGIWILWKRTGAAKRRNSAQDPKTGTEISSAESLRFDFSTIEAVTNKFSNANKLGEGGFGEVYKGLLPSGQEVAVKRLSKSSGQGGTEFKNEVEVVAKLQHRNLVRLLGFCLEGQEKILVYEFVVNKSLDYILFGRLTLILSEFFVVYILHICFNF	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01382	459	ProSiteProfiles	Gnk2-homologous domain profile.	28	135	IPR002902	-
	Pste4g01382	459	Pfam	Salt stress response/antifungal	152	247	IPR002902	-
	Pste4g01382	459	Pfam	Salt stress response/antifungal	35	132	IPR002902	-
	Pste4g01382	459	ProSiteProfiles	Protein kinase domain profile.	351	459	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pste4g01382	459	SUPERFAMILY	Protein kinase-like (PK-like)	330	452	IPR011009	-
	Pste4g01382	459	Pfam	Protein tyrosine and serine/threonine kinase	354	436	IPR001245	GO:0004672\|GO:0006468
	Pste4g01382	459	MobiDBLite	consensus disorder prediction	257	279	-	-
	Pste4g01382	459	Gene3D	Phosphorylase Kinase; domain 1	311	426	-	-
	Pste4g01382	459	PANTHER	CYSTEINE-RICH REPEAT SECRETORY PROTEIN	10	260	-	-
	Pste4g01382	459	FunFam	Cysteine-rich receptor-like protein kinase 25	143	249	-	-
	Pste4g01382	459	ProSitePatterns	Protein kinases ATP-binding region signature.	357	379	IPR017441	GO:0005524
	Pste4g01382	459	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	312	426	-	-
	Pste4g01382	459	Gene3D	-	143	249	IPR038408	-
	Pste4g01382	459	Gene3D	-	27	135	IPR038408	-
	Pste4g01382	459	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	28	134	-	-
	Pste4g01382	459	ProSiteProfiles	Gnk2-homologous domain profile.	141	249	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01382	Pste-Chr4	10294252	10296127	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01382	11	437	Receptor kinase-like Gene Family	AT4G05200	47.380	7.49e-122	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pste4g01382		PK_Tyr_Ser-Thr	1.7e-14	CL0016