Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01380 TTTTAATCTGAGTTCATTCCCCAGTAACTCCCACATTCACATGGTGGTGGAAGTGGGTACTATAAAAATGATATCTTTATGGCATGGCGGTCCCTGGTCACAGTTGTGGTGAGTTTGAAGAGAGGGGTTGAGTTCCATGGAGAGGGAAGAGAGACATGGGTCTTGCCCACACCTCTTTTCTTTATTTTAACACCTACCTTGTGTTTTCCTCATTGCTTCCTTCTCTTTGTTCTCACTCTTTCGCTTTCAAGTGCTGCTTGGAGTGAAAATGTCTACCTCAAGGCCCAGCCAATCATCCAGCAATTCAGGGAGATCAAGACATAGTGTTAGGGTTGCTGCTCAGACAACTGTAGATGCAAAACTCCATGCAACTTTTGAGGAGTCTGGAAGTTCCTTTGACTACTCCAGTTCAGTTCGTGTTTCTGGTACAGCAGATGGAGTCAATCAACCAAGGTCTGACAAAGTTACAACAGCATACCTCCATCACATACAGAGAGGCAAGATGATTCAGCCTTTTGGGTGCTTGCTGGCTCTAGATGAGAAAACATGTAAAGTCATTGCATACAGTGAGAATGCGCCCGAAATGCTGACCATGGTGAGCCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACTGACATAAAAACTCTTTTCACTGCACCAAGCGCTTCTGCATTGCAGAAGGCTCTAGGATTTGCAGAGGTTTCACTTCTTAATCCCATCCTTGTTCACTGCAAGACCTCTGGGAAACCCTTTTATGCGATTATCCATCGTGTTACTGGTAGTTTGGTCATTGACTTTGAACCAGTCAAGCCTTATGAAGTTCCCATGACTGCAGCTGGTGCCTTGCAATCTTACAAGCTTGCTGCCAAAGCAATTACCCGATTGCAATCTTTGCCTAGTGGTAGCATTGATAGACTATGTGATACCATGGTTCAAGAAGTTTTTGAACTCACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGATGATCACGGGGAGGTGATTGCTGAGATAACAAAGCCAGGCCTCGAACCATATCTTGGTTTGCACTATCCGGCCACTGATATTCCCCAGGCTTCACGCTTTTTATTTATGAAGAACAAGGTTCGAATGATAGTTGATTGTCATGCAAAACACGTGAAGGTTCTTCAAGATGAAAAGCTCCCATATGATTTGACTTTGTGTGGTTCCACCTTAAGGGCTCCTCATAGTTGTCACTCGCAGTACATGGCAAACATGGATTCAATTGCTTCCCTGGTTATGGCGGTTGTAGTCAATGACAACGAAGAAGATGGGGACACTGATGCTGTTCAACCACAAAAGAGGAAGAGACTTTGGGGTTTGGTAGTTTGCCATAACACTTCTCCGAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTTCTGGCTCAGGTATTTGCCATCCATGTCAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAGAATATCCTGCGCACCCAGACTCTCTTGTGTGATATGCTGATGCGAGATGCTCCCCTTGGAATTGTATCACAGAGCCCTAATATAATGGATCTAGTGAAATGTGATGGAGCTGCTCTCTTATATAAGAACAAGGTATGGAGATTAGGAGTGTCACCAAGTGAATCCCAGATAAGGGAGATAGCTTTGTGGTTGTCTGAGTACCATATGGATTCCACAGGCTTGAGTACAGATAGCTTGTCTGATGCAGGGTTCCCATTAGCCCTTTCTCTAGGTGATGTTGTGTGCGGAATGGCAGCTGTTAGAATAACTGCAAAAGATGTAGTATTTTGGTTCCGGTCGCACACTGCTGCAGAAATTCGATGGGGTGGCGCAAAGCATGAAGCTGGAGAAAAAGATGATAGTAGGAAAATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTAGTGAAGACAAGGAGCTTACCATGGAAGGACTATGAAATGGACGCTATTCATTCCTTGCAGTTAATACTAAGAAATGCATCCAAAGAAACTGAGAGTACGGATTTACACACTAATGCAATTAATACAAGACTAAGCGATTTGAAGATCGAAGGGATGCAGGAACTGGAAGCAGTAACAAGCGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGCTGGAACATAAAAATTGCTGAATTGACAGGCCTTCCAGTTGGTGAAGCTATTGGAAAACATTTACTCACACTTGTTGAGGATTCTTCAACTGATAAAGTCAAGAAGATGCTTGACTTGGCACTGATAGGTGAAGAAGAGAAGAATGTCCAATTTGAGATAAAAACACACGGGTTTGAGGTGGATTCTGGTCCTATTAGTTTAGTAGTAAATGCTTGTGCAAGCAGGGATCTTAGAGATAATGTTGTTGGCGTTTGTTTTGTGGCACATGATATAACTGCTCAGAAGAATGTCATGGACAAATTCACCCGTATTGAAGGTGATTACAAGGCAATTGTACAGAACCCCAATCCATTAATCCCTCCTATATTTGGCACAGATGAATTTGGCTGGTGTTGTGAGTGGAATCCAGCTATGACGAAGTTAACTGGGTGGAAGCGAGAGGAGGTGATGGATAAAATGCTTTTGGGAGAGGTTTTTGGCACCCAGATGGCATGCTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTTGGCGTTGTACTTAACAAAGCCATGACTGGTTCAGAAACAGAGAAGGTTGCTTTTGGTTTCTTTGCTCGGAATGGCAAGTACGTAGAATGCCTGCTCTCTGTGAGTAAAAAATTGGACGTAGAGGGCCTAGTTACTGGGGTCTTCTGTTTCTTACAACTAGCTAGCCCAGAGCTCCAACAAGCATTACATATTCAACGCCTATCTGAGCACACTGCCTTGAAGAGATTGAATGCATTAACTTACATGAAAAGGCAGATCAGGAATCCTTTATGTGGAATTATATTTTCTCGGAAAATGTTGGAGGGTACTGACTTGGGAACAGAACAGAAACAACTTCTGCGCACTAGTGCTCAGTGTCAGTGGCAGCTTAGCAAAATTCTCGAAGACTCGGATCTTGACAGCATCATAGATGGTTACTTAGATCTTGAGATGGCTGAATTCACTCTGCATGAAGTACTGGTTGCCTCCCTAAGTCAAGTTATGACAAAAAGTAATGGAAAGAGTATCCGAATAGTCAATGATGTTGCAGAGCAGATTGTGGTGGAGACCTTATACGGTGATTGTCTTAGGCTTCAGCAGGTCTTGGCTGACTTCTTACTTATTTCCATCAATTTCACGCCAAATGGAGGTCAGCATAACACATGGGGAAGTGGGGTGCCGGAAACATTGCTGAATCAGATGTTTGGAAATAATGGGCTAGAATCCGAGGAGGGTATTAGCCTACTCATCAGCAGAAAGCTGCTGAAGCTAATGAATGGAGATGTTCGCTATCTAAGGGAAGCTGGCAAATCAGCTTTTATCCTCTCTGCTGAGCTTGCTGCAGCCCATAATTTGAAAGGTTAAAGTTTTGGAAAAAGAATAAAAGATGATGCAACAACACAATCTGTTTTGTACATCATAAAGAGAACGGAGCTAGAAATTAATTGCATCCAAATGTAACTCTAATTTGTTCCACGTTTCTTTAACTTCTTGTAACTTACGTTGTAGATATGTATTAATCTTTTTCCCATTCCTTGACCTGTTCCAAGTTGAGCTTTTCCATAGTTATTTATTCCTCAAGCACACAGCAATGATGAATCATTTGTTGTAAATTGCAAAAGGAAACGTAGAAACCCCGTTAACTATGTCTTACTGTACTTCTTATCTCCACTTGTTAGCCTTGGTTTGTCTTCCTAACTTTTTTTTTTTTTTATGCTAAGAGTCCTGTAAGTTGCG 3940 0.4246 MSTSRPSQSSSNSGRSRHSVRVAAQTTVDAKLHATFEESGSSFDYSSSVRVSGTADGVNQPRSDKVTTAYLHHIQRGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIKTLFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLVIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSIDRLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAEITKPGLEPYLGLHYPATDIPQASRFLFMKNKVRMIVDCHAKHVKVLQDEKLPYDLTLCGSTLRAPHSCHSQYMANMDSIASLVMAVVVNDNEEDGDTDAVQPQKRKRLWGLVVCHNTSPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVSPSESQIREIALWLSEYHMDSTGLSTDSLSDAGFPLALSLGDVVCGMAAVRITAKDVVFWFRSHTAAEIRWGGAKHEAGEKDDSRKMHPRSSFKAFLEVVKTRSLPWKDYEMDAIHSLQLILRNASKETESTDLHTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLPVGEAIGKHLLTLVEDSSTDKVKKMLDLALIGEEEKNVQFEIKTHGFEVDSGPISLVVNACASRDLRDNVVGVCFVAHDITAQKNVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNPAMTKLTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGVVLNKAMTGSETEKVAFGFFARNGKYVECLLSVSKKLDVEGLVTGVFCFLQLASPELQQALHIQRLSEHTALKRLNALTYMKRQIRNPLCGIIFSRKMLEGTDLGTEQKQLLRTSAQCQWQLSKILEDSDLDSIIDGYLDLEMAEFTLHEVLVASLSQVMTKSNGKSIRIVNDVAEQIVVETLYGDCLRLQQVLADFLLISINFTPNGGQHNTWGSGVPETLLNQMFGNNGLESEEGISLLISRKLLKLMNGDVRYLREAGKSAFILSAELAAAHNLKG 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01380 1099 PIRSF Phytochrome_conventional 1 1034 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste4g01380 1099 PIRSF Phytochrome_conventional 1030 1099 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pste4g01380 1099 Gene3D PAS domain 762 874 - -
Pste4g01380 1099 Gene3D - 405 578 IPR043150 -
Pste4g01380 1099 Pfam PAS fold 69 185 IPR013654 GO:0006355
Pste4g01380 1099 CDD PAS 627 733 IPR000014 -
Pste4g01380 1099 CDD PAS 760 871 IPR000014 -
Pste4g01380 1099 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Pste4g01380 1099 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Pste4g01380 1099 MobiDBLite consensus disorder prediction 43 62 - -
Pste4g01380 1099 Gene3D PAS domain 610 747 - -
Pste4g01380 1099 SMART pas_2 618 684 IPR000014 -
Pste4g01380 1099 SMART pas_2 748 817 IPR000014 -
Pste4g01380 1099 Pfam GAF domain 219 400 IPR003018 GO:0005515
Pste4g01380 1099 SMART HisKA_10 893 958 IPR003661 GO:0000155|GO:0007165
Pste4g01380 1099 MobiDBLite consensus disorder prediction 1 23 - -
Pste4g01380 1099 SUPERFAMILY GAF domain-like 408 585 - -
Pste4g01380 1099 PANTHER OS08G0260000 PROTEIN 67 954 - -
Pste4g01380 1099 ProSiteProfiles Histidine kinase domain profile. 900 1095 IPR005467 -
Pste4g01380 1099 Gene3D - 937 1086 IPR036890 -
Pste4g01380 1099 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 430 450 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 548 566 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 711 728 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 731 751 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 PRINTS Phytochrome signature 515 534 IPR001294 GO:0006355|GO:0009584
Pste4g01380 1099 Gene3D PAS domain 74 321 - -
Pste4g01380 1099 ProSiteProfiles PAS repeat profile. 616 686 IPR000014 -
Pste4g01380 1099 SUPERFAMILY PYP-like sensor domain (PAS domain) 763 869 IPR035965 -
Pste4g01380 1099 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 390 IPR016132 -
Pste4g01380 1099 SUPERFAMILY GAF domain-like 198 397 - -
Pste4g01380 1099 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 956 1083 IPR036890 -
Pste4g01380 1099 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 729 IPR035965 -
Pste4g01380 1099 NCBIfam PAS domain S-box protein 623 739 IPR000014 -
Pste4g01380 1099 Pfam Phytochrome region 413 588 IPR013515 GO:0006355|GO:0009584
Pste4g01380 1099 SMART gaf_1 218 410 IPR003018 GO:0005515
Pste4g01380 1099 ProSiteProfiles PAS repeat profile. 749 801 IPR000014 -
Pste4g01380 1099 Gene3D - 199 561 IPR029016 -
Pste4g01380 1099 FunFam Phytochrome 405 539 - -
Pste4g01380 1099 FunFam Phytochrome 612 743 - -
Pste4g01380 1099 Pfam PAS fold 619 733 IPR013767 GO:0006355
Pste4g01380 1099 Pfam PAS fold 749 871 IPR013767 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01380 Pste-Chr4 10245845 10251216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01380 1 1095 Histidine Kinase Gene Family AT1G09570 78.540 0.0 1843
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01380 4 10245845 10251216 Pste4g01380 4 10245845 10251216 ECH
Pste5g02925 5 21993376 21999061 Pste4g01380 4 10245845 10251216 PCT