Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01377 TCTGAAGAGTGCGCGGGAAGCAGTTGTTTCTCTCATTTATCGTTCTGCTTCTGCCGTCCAACCACTCTTCTTCCTCTGCGAATTCCTATTCACCTACCCAAACCAAAAATGGGTATTAAGGGTTTAACAAAGCTTTTAGCGGACAATGCCCCAAAATCCATGAAGGAGAACAAATTCGAGAGCTACTTCGGTCGCAAGATCGCCATTGACGCTAGCATGAGCATTTACCAGTTCCTTATTGTTGTGGGAAGAAGCGGAACTGAAATGCTCACTAATGAAGCCGGTGAAGTTACCAGTCATTTGCAGGGGATGTTTTCGCGCACAATCAGACTTCTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGATTTGAAGAAACAAGAGCTGGCAAAACGTTTCTCCAAGAGGGCTGAGGCTACTGAGGATTTGTCAGAAGCCTTGGAGACTGCCAATAAGGAAGACATCGAAAAATTCAGTAAACGGACAGTGAAGGTTACAAAGCAGCATAATGAGGACTGCATACGACTTTTAAGACTTATGGGAGTGCCCGTCGTTGAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCCTTAACATTTGGAGCCCCTAAATTTCTACGCCATCTAATGGATCCTAGCTCAAAAAAAATTCCTGTGATGGAATTTGATGTTGCAAAGGTTTTGGAAGAGCTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGCTGTGATTATTGTGAAAGCATTCGAGGGATTGGGGGTCAGACAGCTTTAAAACTCATTCGTCAACATGGAACTATTGAAAATATACTGGAGAACATAAACAAAGAGAGGTACCAGATACCTGATAATTGGCCATATCAGGAGGCTCGACGCCTTTTTAAAGAACCAATGGTCATAACTGATGAAAAGGAACTTGATATTAAGTGGTCTGCTCCAGATGAAGAAGGGCTAATAACATTTCTGGCAATAGAAAAAATCAAAGCGGCGAAGAACAAGTCATCACAAGGCCGGTTGGAATCATTTTTTAAGCCAGCAGCAAATCTATCAGTACCTATCAAACGCAAGGATATCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCTTAAGATGTCCTCTGTGCAACCTTCTAACGGGTCAAGGCCCATGGAAACACCAGTGAATAATGTTAAAGAAACTAACAAAAAGAGCAGGGCTGGTGGTAAGAAGAAGAAATAGTTAGCTTTGTGTCTTGATAAGTTAACATGAATGAGGATTAATTTGCAATACCGATGCGCAGTCTTCCAAATTGTATATTGAGGTAGATTTAGTGAACTTGACTAATGTAAGCTACTAAGTTCTTCTTACGTAGAAGGACAATTGAGATGCGGTACTTCATTTGACAGAGATACCCTTAATCCCCCATTCCTGGTTGTAATTTGACTTGTGGTTTCCTTTCCTTCTGCATCGAATGACTATTCACTGGCTTCCCTGGTTAATATTATTATGTATGATAATTTGAGTTATTTTATAATTTACTTAAAAATTTATATGAACGATGATTTTTTATTAGTTGAC 1590 0.4038 SEECAGSSCFSHLSFCFCRPTTLLPLRIPIHLPKPKMGIKGLTKLLADNAPKSMKENKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRFSKRAEATEDLSEALETANKEDIEKFSKRTVKVTKQHNEDCIRLLRLMGVPVVEVYAVASEDMDSLTFGAPKFLRHLMDPSSKKIPVMEFDVAKVLEELNLTMDQFIDLCILSGCDYCESIRGIGGQTALKLIRQHGTIENILENINKERYQIPDNWPYQEARRLFKEPMVITDEKELDIKWSAPDEEGLITFLAIEKIKAAKNKSSQGRLESFFKPAANLSVPIKRKDIKCMLRSFKPAIELKMSSVQPSNGSRPMETPVNNVKETNKKSRAGGKKKK 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01377 416 CDD PIN_FEN1 40 238 - -
Pste4g01377 416 CDD H3TH_FEN1-Euk 241 309 - -
Pste4g01377 416 SMART xpgn3 37 144 IPR006085 GO:0004518
Pste4g01377 416 Pfam XPG N-terminal domain 37 144 IPR006085 GO:0004518
Pste4g01377 416 Gene3D - 38 237 - -
Pste4g01377 416 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 37 394 IPR006084 -
Pste4g01377 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 243 258 IPR006084 -
Pste4g01377 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 64 78 IPR006084 -
Pste4g01377 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 186 206 IPR006084 -
Pste4g01377 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 118 137 IPR006084 -
Pste4g01377 416 SMART HhH_4 240 273 IPR008918 GO:0003677|GO:0003824
Pste4g01377 416 MobiDBLite consensus disorder prediction 382 405 - -
Pste4g01377 416 SUPERFAMILY PIN domain-like 38 253 IPR029060 -
Pste4g01377 416 FunFam Flap endonuclease 1 238 305 - -
Pste4g01377 416 SMART xpgineu 183 238 IPR006086 GO:0004518
Pste4g01377 416 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 238 359 IPR036279 -
Pste4g01377 416 FunFam Flap endonuclease 1 37 239 - -
Pste4g01377 416 Hamap Flap endonuclease 1 [fen]. 37 353 IPR023426 GO:0016788
Pste4g01377 416 MobiDBLite consensus disorder prediction 382 416 - -
Pste4g01377 416 SMART 53exo3 65 325 IPR002421 GO:0003677
Pste4g01377 416 Gene3D - 238 305 - -
Pste4g01377 416 Pfam XPG I-region 192 253 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01377 Pste-Chr4 10220509 10226105 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01377 37 386 Core DNA Replication Machinery Family AT5G26680 77.632 0.0 607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01377 4 10220509 10226105 Pste4g01377 4 10220509 10226105 ECH