LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste4g01368	CTTCATAACTCTTCCCCTCACCCCACCAAAACACCCTTTAGTTTCCTAGGTATTCTTCCACGTAGGTTTCCAAAGCATTGGTCCTGGATTCAAGACTTGGTGAGTGAGAGTGACGTACACATGGGAAGACACTCTTGCTGCTACAAACAGAAGTTACGCAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTCTCAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCGGTCCCCAAACTAGCTGGTTTGCAAAGATGTGGGAAGAGTTGCAGATTGAGGTGGATAAATTACTTGAGACCTGATTTGAAGAGAGGAGCATTCTCACAGCAAGAAGAGAACATGATTATTGAACTCCATGCAGTCCTTGGAAACAGGTGGTCTCAGATTGCAGCACAATTACCTGGAAGAACTGACAATGAGATCAAAAACCTATGGAACTCGTGCCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGGTTGAGAACGACAAGGACATGCCACCTTCAACCGACAAAAGCAATCAGAAAGCCTCAGTGGGATCCAATGAAGTGAGTTTGGTTGATCAGCCACCAAAACAAATGCCTTCATCGGAGAGATACCCTCTTGAAGTTTCCACTAGTTCCACCCAGGAACTATTCCTTGATAGGTTTGGTACAACCTGCCATGACAACAACACTTGCAGACCCTCTGATGTGGTAGGATCATATTTCTCCTTCCAGCAGTTGAATTATGGAACAACTAACATGAGCCTCTCTGCAAACACCAACACCTCTCTTTGCTTCCTTCCACCCTCCACTTCTTCAGACCTTAATAAATCTACCATAACCTCCTCCATGCTCCATTCAGTTTTCCCAACTCATGTGAAGCTCCAATCTAACAACAATCCTTCCATATCCTCTGATGGGGTTCAAAACTGGGAAGCTAACAACAGAAACAAAAATAATGGGAGCATGCAGTTGCAAAGCGGCACAAATTTCCTTGACAACACGTGGGGGATATCAGAGTCAATGAAGGTTAACATTAACAAAGATGCTCAAATACCACTACAAGCAGAACAAGAAGATCTAAAATGGTCGGAGTATCTTAACAACCCATTTATTCTGGGAAACACAACGCAGAGTCAAATTCAAACCTCTCAATCTATCTACACTGAGGTTAAACCAGAAACAGATTTCATAACAGACGAGTCATGTGCTAGTTGGAATCATCACCCTCCAGCTTTTCAACTTTCCGATATATATAGCAAGGATCTGCAAAGATTTTCGGTAACTTATGGGCAAACCCTG	1323	0.4376	LHNSSPHPTKTPFSFLGILPRRFPKHWSWIQDLVSESDVHMGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENMIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDMPPSTDKSNQKASVGSNEVSLVDQPPKQMPSSERYPLEVSTSSTQELFLDRFGTTCHDNNTCRPSDVVGSYFSFQQLNYGTTNMSLSANTNTSLCFLPPSTSSDLNKSTITSSMLHSVFPTHVKLQSNNNPSISSDGVQNWEANNRNKNNGSMQLQSGTNFLDNTWGISESMKVNINKDAQIPLQAEQEDLKWSEYLNNPFILGNTTQSQIQTSQSIYTEVKPETDFITDESCASWNHHPPAFQLSDIYSKDLQRFSVTYGQTL	441

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste4g01368	441	SUPERFAMILY	Homeodomain-like	52	148	IPR009057	-
	Pste4g01368	441	PANTHER	MYB DOMAIN PROTEIN 55	41	352	-	-
	Pste4g01368	441	FunFam	Myb transcription factor	51	107	-	-
	Pste4g01368	441	CDD	SANT	109	149	IPR001005	-
	Pste4g01368	441	Gene3D	-	108	185	-	-
	Pste4g01368	441	ProSiteProfiles	Myb-like domain profile.	49	101	IPR001005	-
	Pste4g01368	441	FunFam	MYB transcription factor	108	180	-	-
	Pste4g01368	441	CDD	SANT	57	101	IPR001005	-
	Pste4g01368	441	Gene3D	-	51	107	-	-
	Pste4g01368	441	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	49	105	IPR017930	-
	Pste4g01368	441	ProSiteProfiles	Myb-like domain profile.	102	152	IPR001005	-
	Pste4g01368	441	SMART	sant	53	103	IPR001005	-
	Pste4g01368	441	SMART	sant	106	154	IPR001005	-
	Pste4g01368	441	MobiDBLite	consensus disorder prediction	159	182	-	-
	Pste4g01368	441	Pfam	Myb-like DNA-binding domain	107	151	IPR001005	-
	Pste4g01368	441	Pfam	Myb-like DNA-binding domain	54	101	IPR001005	-
	Pste4g01368	441	MobiDBLite	consensus disorder prediction	183	204	-	-
	Pste4g01368	441	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	106	156	IPR017930	-
	Pste4g01368	441	MobiDBLite	consensus disorder prediction	159	217	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste4g01368	Pste-Chr4	10143911	10145484	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste4g01368	41	441	MYB Transcription Factor Family	AT1G09540	51.429	2.44e-117	346

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Pste4g01368		Myb_DNA-binding	3e-15	CL0123