Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01364 CTCACATCTCTTGTTCTTGCACTCCCCTTCTCAACTCTCTTCTGGGGTTTCCTCTCTCTCATTGTTGCTGCTGCAAACTCAAGTACACAAAGCTTGAAAAGCTGGGATGGAGACTATTGGTTCTGTGGACGACCTCTTGGATTTTTCATCAGACATAGGTGAGGAAGATGATGATGACGACAAACCTAGGAAAGTCTGTCCTTCACTTAACTCAAAATGTGGCGATCCATCATTGTTTAACCCATTGGTCCCAGATGATCCAAACCATTCATTTTCTGTTTCCATATTGTGGAATCACATGTTCGGATGTTCCTCAGTTCAGAAGTTCCTCAGTTCAGAAGAAAATAAATCTGAGTTTGCAGAAGAGGAGCTTGAATGGTTGTCCAACAAAGATGCATTTCCCTCTCTTGAAACGTTTGTTGGCATATCATGTATTCAACCTGACACAACCAAGAACAAAAAGACAGTGCCAGTACTTGAATACAGCACTGGCAGTAGCAACAGTAATAATAGCACTAACAGTATTTCTCTCCTAAACAGCTGTGATCACCTTAAGGTCCCAGTCCGTGCACGGAGCAAGAGTCGCAGTAGGCGTCGCCCTGGCATTGCTGACAACTCTAGTCAGCAAGTCTGGTGGAGACAACCAAGTAATGAAACTTTTAAAGCAGATGAAGGGATGAAAATCTCACCCATTGGGAGGAAATGTCAGCACTGTGGAGCTGAAAAAACTCCACAATGGCGGGCAGGTCCCCTTGGGCCGAAAACACTTTGTAATGCATGTGGGGTTAGGTTTAAGTCCGGGCGGCTTGTACCCGAATATCGTCCTGCAAGTAGCCCATCTTTTCGCAGTGATTTGCATTCTAATTCCCATAGGAAGATAATAGAGATGAGGAGGCAGAAGCAAATGGGAATGGGATAAAATGCAAATTGGTAGTGAGCAGTACTTTTTTCATTCAGCATTCTAGGACTTAGTGATTTGGTTTTCTTTTCGATTTTGATTTATTCTGATTTAATTTTTCGTCCATTTTTGCTATGGGATGATTTTAGACAGGGCAGTGAAATTCTTGATTGAAAATGAAGTTAGGGAGGTCTTAAATCATTTGTATCTTTGTTATGCTGAAAACAAAGAGCCTATTTAGGATCTTTTAATTTGGTTATTTTTTATGGTTGTAAACTTGTAGTGTGTTTAGAGAGAAGGGAAAAAGGTAAGTTGCTGGAATTATGATTGTTGTCCCTTTACCAGAGAGCAGCTCTCGTGCTTGTCTGAACTAATTCTAAATTGTTAAGACAGTAGCAGTGTAGTTGATTCTTGAGGAATTGGTGACACCATTTAAGGAGTGATGACATTATTCATGTATTTGATGGAAGCAAAGATAAAAAATGCTGTCTTATCTTAGATGTAAAGACAGGTAGTTCTTTATTGTTGGATCCTCCTTTTAAGGAGGCTAGATGTATGCAACAAAATTTGAATTAATCATGCCTTGACTAATTGGTGGCAACATGTAATCGTTGTGTTTCAATGTCTTGCTGACAATTACAAAC 1542 0.4021 METIGSVDDLLDFSSDIGEEDDDDDKPRKVCPSLNSKCGDPSLFNPLVPDDPNHSFSVSILWNHMFGCSSVQKFLSSEENKSEFAEEELEWLSNKDAFPSLETFVGISCIQPDTTKNKKTVPVLEYSTGSSNSNNSTNSISLLNSCDHLKVPVRARSKSRSRRRPGIADNSSQQVWWRQPSNETFKADEGMKISPIGRKCQHCGAEKTPQWRAGPLGPKTLCNACGVRFKSGRLVPEYRPASSPSFRSDLHSNSHRKIIEMRRQKQMGMG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01364 270 MobiDBLite consensus disorder prediction 166 180 - -
Pste4g01364 270 MobiDBLite consensus disorder prediction 154 180 - -
Pste4g01364 270 FunFam GATA transcription factor 190 269 - -
Pste4g01364 270 PANTHER GATA TRANSCRIPTION FACTOR 46 266 - -
Pste4g01364 270 MobiDBLite consensus disorder prediction 1 32 - -
Pste4g01364 270 CDD ZnF_GATA 199 247 IPR000679 GO:0006355|GO:0043565
Pste4g01364 270 Coils Coil 75 95 - -
Pste4g01364 270 Gene3D - 194 247 IPR013088 GO:0006355|GO:0008270
Pste4g01364 270 ProSiteProfiles GATA-type zinc finger domain profile. 194 230 IPR000679 GO:0006355|GO:0043565
Pste4g01364 270 ProSitePatterns GATA-type zinc finger domain. 200 225 IPR000679 GO:0006355|GO:0043565
Pste4g01364 270 SMART GATA_3 194 244 IPR000679 GO:0006355|GO:0043565
Pste4g01364 270 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 196 257 - -
Pste4g01364 270 Pfam GATA zinc finger 200 233 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01364 Pste-Chr4 10117149 10120865 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01364 86 270 C2C2-Gata Transcription Factor Family AT3G24050 46.977 1.02e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste4g01364 GATA 9.8e-17 CL0167