Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01356 ATGGCTAGGAAGAAAGTGAAATTGGAGTATATATCTGATGCGACAGCAAGGAGAACAACGTACAAGAAAAGGAAGAAGGGTATGATTAAGAAGGTGAATGAGCTTAGCATTCTTTGTGGAATCCCAGCCTGTGCCATAATTTCGAGTCCTTTTGATTCTAAGGCAGAGATTTGGCCAGACCCAGATGGAGCAAAGGAGGTGATTCAGAAGTATCAGGATGCATCTGTGTTAGATCAAAGTAAGAATGTCAACCAAGAGAGTTACATAATGCAGAAAATTGTCAAAGTGCAGGATCAGCTCAAGAAGCTGCGTCAGGAGAACCATGACAAGGAGAATACCCTTTCCATTTGCAACTACGTTCAAGGTGAACACCTTCCAAATGATGTTCAAGAACTCTTACAACTCAACAACCTTATTCACAAGACTATCAGGGAAATTCAAATTCTCTCCGATGTTCTCAATTACGACTCTACTTAG 477 0.4088 MARKKVKLEYISDATARRTTYKKRKKGMIKKVNELSILCGIPACAIISSPFDSKAEIWPDPDGAKEVIQKYQDASVLDQSKNVNQESYIMQKIVKVQDQLKKLRQENHDKENTLSICNYVQGEHLPNDVQELLQLNNLIHKTIREIQILSDVLNYDST 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01356 158 Coils Coil 93 113 - -
Pste4g01356 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste4g01356 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pste4g01356 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste4g01356 158 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Pste4g01356 158 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 146 - -
Pste4g01356 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Pste4g01356 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pste4g01356 158 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Pste4g01356 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01356 Pste-Chr4 10010629 10011105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01356 3 149 Type I MADS-box Gene Family AT1G65330 42.308 6.98e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste4g01356 SRF-TF 1.6e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01356 4 10010629 10011105 Pste4g01356 4 10010629 10011105 ECH