Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01355 ATGACTAGGAAGAAAGTTAAACTTGGTTATATTTCTGATGCCGCAGCAAGGAAAGCCACCTACAAGAAAAGGAAAAAGGGTATCCTAAAGAAGGTGAGTGAACTCACCATTCTTTGTGGTATCCCTGCGTGTGCTATAATTTCCAGTCCCTTTGATTCTAAGCCAGATATTTGGCCAGACCCAGAAGGAGCAAGGCAGGTGATTCAGAAGTATCTGGATGCGTCTGTGGTAGATGAAAGCAAGAATGTCAACCAAGAGAGTTACATCATGCAGAAAATTGCCAAAGCCCAGGATCAGCTCAAGAAGCTGCATCAGGAGAACCATGAGAAGGAGATGACCTTGTCCATGTTCAAGTACATGCATGGTCAAGACCTCCCAAATAATGTTGAAGAACTGAGAGAACTCAAGAAAATGATTGAGAAGAATATGTGGGAAGTTGAAAGCAAGTCGGATGTGCTCAATTGTGAGTCTATTTAG 477 0.4256 MTRKKVKLGYISDAAARKATYKKRKKGILKKVSELTILCGIPACAIISSPFDSKPDIWPDPEGARQVIQKYLDASVVDESKNVNQESYIMQKIAKAQDQLKKLHQENHEKEMTLSMFKYMHGQDLPNNVEELRELKKMIEKNMWEVESKSDVLNCESI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01355 158 Coils Coil 93 113 - -
Pste4g01355 158 PANTHER MADS BOX PROTEIN 3 145 - -
Pste4g01355 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Pste4g01355 158 Coils Coil 129 149 - -
Pste4g01355 158 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pste4g01355 158 FunFam Agamous-like MADS-box protein AGL92 13 108 - -
Pste4g01355 158 Gene3D - 13 143 IPR036879 GO:0003677|GO:0046983
Pste4g01355 158 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Pste4g01355 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pste4g01355 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pste4g01355 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01355 Pste-Chr4 10004600 10005076 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01355 3 153 Type I MADS-box Gene Family AT1G65300 39.610 2.20e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pste4g01355 SRF-TF 5.2e-14 No_clan