Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01329 GTCACCAGCGCATTATAGCACACCACACAAAAAAGCAGAGAACAACTGTTACTCACACAAATCCAAACACGCCATGGGTATGCGTATGCCATGGATCTAGCTCTTTCTTCCTTCTAACCGCCGTTTTCGCATCTCGCTTCCTTCTTTTCCATTACAAACAGTAAATGAGTGGTTTTTGAGCAGCAGTTAAAAGAGAAAGGGATTCGGTGAAGATGACATCGGTTGGTGTGGCACCAACTTCAGGCATGAGAGAAGCCAGTGGGCATGGAGCAGCAGGTGTGGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATGGAAGCCACCGTTGTTGATGGCAATGGAACGGAGACGGGGCATATCATTGTGACTACCATCGGGGGTAGAAATGGTCAGCCGAAGCAGACTATAAGCTACATGGCAGAGCGTGTTGTAGGGCACGGATCTTTTGGAGTTGTCTTCCAGGCTAAGTGCTTGGAAACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAAAGGTACAAGAACCGGGAGCTGCAAACAATGCGTCTTCTTGATCACCCAAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCCACCACTGAAAAAGATGAACTATACCTGAATCTGGTACTTGAGTATGTACCCGAAACTGTTAATCGGGTGATCAAGCATTACAACAAGTTGAACCAAAGGATGCCGCTGATATATGTCAAACTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCATCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTGAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAGGTTTTGGTAAAAGGCGAACCAAATATATCATACATATGTTCCAGATATTATAGAGCTCCTGAGCTCATATTTGGAGCAACCGAATATACTACAGCCATTGATATTTGGTCTGTTGGATGTGTTTTAGCTGAGCTGCTGCTTGGACAGCCTTTGTTTCCTGGTGAGAGTGGAGTTGATCAACTTGTTGAGATTATCAAGGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAGTTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAACGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGACTACTACAATACTCCCCTAACTTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCTTTCTTTGATGAGCTTCGTGATCCCAATACTCGCTTGCCAAATGGACGATTCCTTCCGCCACTATTTAATTTCAAATCTCATGAACTGAAAGGAGTCCCAGCTGAGATTTTGGTGAAATTGGTTCCAGAGCATGCGAGGAAGCAATGCCAGTTTCTTGGCTTAACTGCAAGTGTTGTTTTCAAACGAGAATGCTGCGCTTTCCTTGTATTTGATGATATGATATTTGTTGGTATCTTTATTGTATTCGGTTGCCTTGTAAAAGCAGATTTAGAGATACATGCTACTCATTATTACCCAACCCCCGATGGGTATGCAGAATACCCTGTTTCCTGTATCACAGCAGATTTGAAAGCGAGGATGCCGGTGAGGAAGTATTACTGTGATTACTGCGACAAGCAATTCCAAGATACAGCAGGGGATAGGAAACGGCACATTCAAGGTATTCAGCACCAGCAAGCTAAAGCTCGGTGGTACGCTTCCTACAAACAAGAACAGATCCCTCCTAATCCTATTCCTCTCTGCTTTCACTTGGTCAACACGGGATTTTGCCGTTACGGCCACTCTTGCAAGTATCTCCATCCCATTCCCAACACCAATAAGACCACACCCTCACCCTCACCAGGGAATGTAGGCAATCTGCCCCCCTCGTTGCAGCCTCCGCCTGAGGGGGGTTATCCCCAACTTCCTTTTCTCCACTGGGGATAGATTTCCATTTTCCACCAACTGCATCTCTTCTCTGTTGGGAGTGGGACCCAACTACACTTTCTTCAATTATTTTTGTTTTAACCTTTCATTTTTTCTACTTTTCTCTCTCTGCTTTCCAATACACATTTTCTCTGTTTTGGGACACTTTCACACCACCACCACTACTACTACATGCATTACTGTGATAGCAAATGATTATACTTCATAATCATGTAACTTCAACCTTTTTCTTTAGTAAGAATCATATCATATAACTTGGAATGTCCAAA 2254 0.4321 MTSVGVAPTSGMREASGHGAAGVDRLPEEMNDMKIRDDREMEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVNRVIKHYNKLNQRMPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALDALTHPFFDELRDPNTRLPNGRFLPPLFNFKSHELKGVPAEILVKLVPEHARKQCQFLGLTASVVFKRECCAFLVFDDMIFVGIFIVFGCLVKADLEIHATHYYPTPDGYAEYPVSCITADLKARMPVRKYYCDYCDKQFQDTAGDRKRHIQGIQHQQAKARWYASYKQEQIPPNPIPLCFHLVNTGFCRYGHSCKYLHPIPNTNKTTPSPSPGNVGNLPPSLQPPPEGGYPQLPFLHWG 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01329 590 MobiDBLite consensus disorder prediction 564 581 - -
Pste4g01329 590 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Pste4g01329 590 SUPERFAMILY CCCH zinc finger 528 553 IPR036855 GO:0046872
Pste4g01329 590 Gene3D Transferase(Phosphotransferase) domain 1 154 402 - -
Pste4g01329 590 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Pste4g01329 590 FunFam Shaggy-related protein kinase kappa 154 402 - -
Pste4g01329 590 SUPERFAMILY Protein kinase-like (PK-like) 73 384 IPR011009 -
Pste4g01329 590 ProSiteProfiles Protein kinase domain profile. 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g01329 590 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Pste4g01329 590 ProSiteProfiles Zinc finger C3H1-type profile. 524 552 IPR000571 GO:0046872
Pste4g01329 590 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 404 - -
Pste4g01329 590 MobiDBLite consensus disorder prediction 1 29 - -
Pste4g01329 590 CDD STKc_GSK3 69 361 IPR039192 -
Pste4g01329 590 SMART serkin_6 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g01329 590 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Pste4g01329 590 SUPERFAMILY beta-beta-alpha zinc fingers 479 522 IPR036236 -
Pste4g01329 590 MobiDBLite consensus disorder prediction 556 581 - -
Pste4g01329 590 Pfam U1 zinc finger 479 514 IPR013085 GO:0008270
Pste4g01329 590 Gene3D Classic Zinc Finger 478 523 - -
Pste4g01329 590 Pfam Protein kinase domain 74 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01329 Pste-Chr4 9792972 9798799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01329 80 386 MAP Kinase Gene Family AT2G43790 34.796 2.28e-53 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Pste4g01329 Pkinase 1.3e-64 CL0016
TF C3H Pste4g01329 Pkinase 1.3e-64 CL0016