Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01279 ATGTTGCAACTCACAAAGGCGTCCTCCTCTCGACTTACTGAATCTATGGGTGTGGAGAAGGCATCCAAAAGAGATAATATTTCTTTTGATCGTGCAAGAAGCTCTCCTGGACACTATGATTTATCAAAAATTAGTGATCCTTTGGATCGTTTGCATAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTACTTCCGAGAAAGATCTGGGTAATGAATTTTTCAAGCAGAAAAAGTTTAAGGAGGCTAGAGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCTATGGCCAATATCAAGCTCAGAAGGCAAGCTTACGTTTTATTCCAAGACGCTGAGGATGACTGCACCGAGGCCTTAAGTCTTGATGATCGTTACATAAAAGCATACTCACGAAGAGCAACAGCTAGAAAAGAACTTGGAAAGATTAAAGAATCAATGGACGATGCTGAATTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGATATTCTTCAGAAAGCATCAGGAGCTCTGAGAAGCGCTGTACAGGGAACTCAAAAAGTGGGGAAGTCAGAGGAAAAAGTTAATGGAGGCAGTATCCACCCCATTTCAGATGGTACTCAAAAGGCTGGACCAGCTGAAGTTCAGCATCATAAAAAGCAAATACCTGTTAAAAAACCACTCTTAACAGAGGAGGTTAATAGCAGAGATACAAAAGCCAGAAGCAGGCCTCAAGCACAAGGAGGCAATGGTTCTAAGGAAGGTTCAGGTGCAAGCAACAGTTTGGAGGAGGTTAAATATCCTGAAATTCTTCCCTCTTTTTGTCAAAGAAATCACAGAATTACAAAGCAGGAAATGAAAGCATCTGTTCAACAGCTTGCTTCTCGTGCTGCTTCTAGAGCCATGGCTGAAGCTGCCAAAAACATAACACCTCCAACTACAGCTTATCAGTTTGAGGTCTCATGGAGAGCATTTTCAGGAGATCCTGCTCTGCAGGCCCGTCTACTAAAGGCTATATCTCCCAATGAATTGCCCAAAATATTCAAAAATGCCTTATTTTCTACCCTACTAATTGACATCATCAAGTGTCTTGCATCTTTTTTCAGAGAGGACATGGATCTGGTTGTCAGTTATATGGAGCATTTGACCAAGGTGCCAAGATTTGACATGATTGTAATGTGCCTTTCATCAACATATAAGGATGACATACGAAAGATCTGGGATGAAATGTTCGGTAGTGAGGCAGCACCAATTGAGTATGCAGAAATTATGGACAGCCTCCGATCAAAGTTCTGCCAGTGACATCTTCACTTGTATGTTTTAACTTATAATGTTTTCTTTCCTCGGTGGATCCTCTATTCCTCTCCCTTCCACAACTATCCTTGTCTTTACTTGTAAATTATTATGCTTTTGAAATGTTTGAGCATTATTGACGCTCAACTTGATCCATCTTTAAGCTATTAGCTAAAAGTGGGAGAAAAAAGAAAAAACAAAAAGCTCATGTGTAGTGTTTGAGGCTGAGGGTCCAGTACCTTTTAATGCTTTTTCGCTTCAGGTTTTGGGTATTCTGAAATGAAGAAAAGTAAAACAATTTTAGTTGATAATGAGAAAAGCAACCATTTTAATACATCTATAA 1684 0.3979 MLQLTKASSSRLTESMGVEKASKRDNISFDRARSSPGHYDLSKISDPLDRLHSSFVPEDVPDATSEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRAMANIKLRRQAYVLFQDAEDDCTEALSLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNNQEIKKQYADAKSLYEKDILQKASGALRSAVQGTQKVGKSEEKVNGGSIHPISDGTQKAGPAEVQHHKKQIPVKKPLLTEEVNSRDTKARSRPQAQGGNGSKEGSGASNSLEEVKYPEILPSFCQRNHRITKQEMKASVQQLASRAASRAMAEAAKNITPPTTAYQFEVSWRAFSGDPALQARLLKAISPNELPKIFKNALFSTLLIDIIKCLASFFREDMDLVVSYMEHLTKVPRFDMIVMCLSSTYKDDIRKIWDEMFGSEAAPIEYAEIMDSLRSKFCQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01279 449 MobiDBLite consensus disorder prediction 17 31 - -
Pste4g01279 449 Pfam Potential Monad-binding region of RPAP3 327 414 IPR025986 -
Pste4g01279 449 SMART tpr_5 135 168 IPR019734 GO:0005515
Pste4g01279 449 SMART tpr_5 63 96 IPR019734 GO:0005515
Pste4g01279 449 SUPERFAMILY TPR-like 61 183 IPR011990 GO:0005515
Pste4g01279 449 MobiDBLite consensus disorder prediction 256 275 - -
Pste4g01279 449 MobiDBLite consensus disorder prediction 1 16 - -
Pste4g01279 449 MobiDBLite consensus disorder prediction 1 45 - -
Pste4g01279 449 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Pste4g01279 449 MobiDBLite consensus disorder prediction 228 255 - -
Pste4g01279 449 PANTHER OS05G0129900 PROTEIN 16 448 - -
Pste4g01279 449 Gene3D Tetratricopeptide repeat domain 55 166 IPR011990 GO:0005515
Pste4g01279 449 ProSiteProfiles TPR repeat profile. 135 168 IPR019734 GO:0005515
Pste4g01279 449 MobiDBLite consensus disorder prediction 197 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01279 Pste-Chr4 9403376 9410343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01279 67 138 U-box Gene Family AT3G07370 36.986 1.65e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01279 4 9403376 9410343 Pste4g01279 4 9403376 9410343 ECH