Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01272 CCACACCATTCCATTCCTTCTCTTTCACTGTTCACTCTCTTTCCTCTTTTCTTTTCTTTTCTTTCTTCCTTTTCCCCAGGTTTTATTGGAAAAGAAAAACCAGGTCTAGTCCCTTTCCACCCACTTCTCTTCTTCTTCCAAACAAACCTGCATGCTTTCTTTCCACTCTATGCTAGATCTTTCTTACTTTCCTTAACATATGCTCTATTGATTTCTGCAAATCCCTGCTCGCTTCGCTATCCAATATATATGTATGTGTATCTACGTCAGTGGAGGGGATGGAAGATATTTACAAGATGAACCCTCTCCTACCGTGTTCCGCTGATGTCGTCAGACAAGTCAACGTTAACGTCAACGTTTCCGCTTCTGCTTCTGAATTGAATCTAGGACTTGTATCCGATAACTTCCTTCAGCTCCAAGACCCCGAAACTTCCGATCGCTTCATCAAGTCCCAGATCATCACTCACCCTCTCTATTCAAATCTTCTATCAGCCTACATAGAATGTCGAAAGGTTGGAGCGCCACCACAACTCGCTTCACTTCTTGAACAAATAGCCCGTGAAAGCCACCCGACCGAACCTCTTCGTGAGATAGGAGATGATCCCGAACTTGACGAGTTCATGGAGTCATACTGCGAAGTTCTTCATAGATACAAGCACGAGTTGGCCAAGCCATTCAACGAAGCCACCTTGTTTTTGTGCAATATCGAATCACAACTTAGTCATCTTTGTAAGGGAACACTATCAATGCCGCTGGAGAACAACCGCTCAGATGAAGCAGCTGGAACATCAGAGGATGAATTAAGTTGGGAGAAGGTGGAAGCAGTTGAAGGTCATGAACCTTCTGATCAGCGTCCAGGTGATCAAGAGCTTAAAGAAATGCTACTGCGTAAGTATGGTGGCTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGAAAAAAGGGTAAGCTACCAAAGGAAGCAAGCATGATACTCATGGACTGGTGGAATTCTCACTATAGGTGGCCTTATCCTACGGAGGAGGAGAAAGTGCAGCTATCAGAAATGACCGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAAAGGAAACGGCATTGGAAACCATCTGAGGACATGCGATTTGCCATTATGGATGGTGTAGGTGGTAGTGGCATAGGAGGACCTATGTAATTTATTTACGGTGAGGGGTCGTGTTGATTCCTGCTATTTGTACCCTTTGTGTGTATACGTTCTTTTCCGTCAGATATTGATTTTTTTAACCTGCTTTTGTATGCTAAGCACTAAGTAGGTCGTCCTTCGCCTTATATAATCCAAGAGTGTAAAAACTGTAGCTCTTATACCCGACAGTGATAATCTATCAATGTTACTCAATCATTATTTTAT 1397 0.4259 MEDIYKMNPLLPCSADVVRQVNVNVNVSASASELNLGLVSDNFLQLQDPETSDRFIKSQIITHPLYSNLLSAYIECRKVGAPPQLASLLEQIARESHPTEPLREIGDDPELDEFMESYCEVLHRYKHELAKPFNEATLFLCNIESQLSHLCKGTLSMPLENNRSDEAAGTSEDELSWEKVEAVEGHEPSDQRPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKEASMILMDWWNSHYRWPYPTEEEKVQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMDGVGGSGIGGPM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01272 301 SMART KNOX1_2 54 98 IPR005540 GO:0003677|GO:0005634
Pste4g01272 301 SUPERFAMILY Homeodomain-like 219 290 IPR009057 -
Pste4g01272 301 SMART KNOX2_2 101 152 IPR005541 GO:0003677|GO:0005634
Pste4g01272 301 Pfam KNOX2 domain 105 151 IPR005541 GO:0003677|GO:0005634
Pste4g01272 301 ProSiteProfiles 'Homeobox' domain profile. 217 280 IPR001356 GO:0003677
Pste4g01272 301 SMART HOX_1 219 284 IPR001356 GO:0003677
Pste4g01272 301 SMART ELK_2 197 218 IPR005539 GO:0003677
Pste4g01272 301 Pfam KNOX1 domain 56 97 IPR005540 GO:0003677|GO:0005634
Pste4g01272 301 CDD homeodomain 229 281 IPR001356 GO:0003677
Pste4g01272 301 Gene3D - 215 287 - -
Pste4g01272 301 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 287 - -
Pste4g01272 301 Pfam Homeobox KN domain 237 276 IPR008422 GO:0003677|GO:0006355
Pste4g01272 301 ProSitePatterns 'Homeobox' domain signature. 255 278 IPR017970 GO:0000981|GO:0006355
Pste4g01272 301 ProSiteProfiles ELK domain profile. 197 217 IPR005539 GO:0003677
Pste4g01272 301 Pfam ELK domain 197 218 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01272 Pste-Chr4 9360979 9365522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01272 44 295 Homeobox Transcription Factor Family AT1G23380 53.488 4.77e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pste4g01272 KNOX2 7.6e-23 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01272 4 9360979 9365522 Pste4g01272 4 9360979 9365522 ECH
Pste5g02998 5 22934410 22940437 Pste4g01272 4 9360979 9365522 PCT