Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01251 GGGAAAGTAGAATCGAAAGCAGAAAAAAGCGCGGGAATCGAAATGGGAAGCAGTAGCAGGAAGAAGAAGCAAGATGTGGAGTTAGAGAGAGTTCGCCTAATCAGTTTAGCCCTCGATTTCGGCTTCGATGAATCCTCCGCCAATAAATGCCTCAACCGTCTCATCGCTCTCTACGGTGAAGACGGTCGTGATTTCATCACCGTCGAGCACTGCGGCGACGATTTCCTCGCCGCTTTGGCGGAGTCCATGCAGACCGAGGATTGGGATGACCTGCAGGAAATGGAATCGCAAGCGTGTGGAACCTTGTCGCACGTGCTCGATAAAACTCTTCCCACGTCTTCCAATGCTGATAATTACCCTGCTTCCACAAGCTTCATTGACATTGATGATGACTCGCCACAACCGAAGAAACGCAAACGCCACGCTAATGTTGTGGAGTTGGATTCCAGTGACGACGAGGATAAGTATTGCAGTGCTTCCAGGGAAAAATCCTTGGATCACAGAAGTGGCATCACTCAAGGCTCGGTTTCATCTACTTCCAGCAAAAGGCAATCCTCCTTTGCATCAAGGGATAAAAGCAGTACTCTCACTTACAAAGAATTACAAGCACTAGACGATATTGAATTGGCCAACGTTGTTATCTTTGGTAATAGGACATTTCGACCATTGCAGCATCAAGCATGTAAAGTAGCTTTGTCAAAGCAAGATTCTTTTATTCTTATGCCTACCGGGGGCGGTAAATCTCTCTGCTATCAGCTTCCAGCAACTCTTCAACCCGGTGTTACCGTAGTTGTATCACCATTACTTTCACTCATTCAGGATCAGATAATAACACTAAACTTCAAGTTTGGAATACCAGCTACTTTCTTAAATTCTCAACAAACTGCTTCCCAGGCCACAGCTGTCCTTCAAGAGCTAAGAAAAGACAAACCATCATGCAAACTTTTGTATGTGACACCTGAGAGAATCGCTGGCAACCAATCTTTTCTTGAGATTCTAAAATGCATGCACTGGAAGGGACAGCTATCTGGATTTGTTGTTGATGAGGCACATTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGGGGATTGGGATCTCTTAAGCAACACTTTCCAGATGTACCTGTCATGGCATTGACTGCCACTGCAACCCATGCAGTTCGTGAGGACATATTAAATGCTTTAAGAATTCCCCGTGCACTTGTGCTCGAAAGAAGCTTTGACAGACCAAATTTGAAGTATGAAGTCATTGGTAAGACGAAGGAGCCACTAAAGCAGCTTGGACAGCTACTAATTGATCGCTTCGGTAATCAGTGTGGAATTGTTTACTGCCTTTCAAAAAGTGAATGTGTTGAGGTCTCCAAATTTTTGAATGAGAAATGTAAGATCAAGACAGTTTATTACCATGCTGGCTTGGCTGCTCGTCAGAGAGTAGCTGTTCAAAGGAAATGGCATGAGGGGGAGGTCCATATTGTGTGTGCAACTATTGCTTTTGGAATGGGAATAGACAAACCTGATGTTCGCTTTGTCATCCACAATACAATGTCAAAATCAATCGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGATAATCTTGCTTCAGTTTGCATTGCTCTATACCAGAAGAAGGATTTTAGTAGAGTTGTGTGTATGATAAGAAACGGCCAAGGATATAAAAAGGAAAGATTTAAGACAGCAATGGCTCAAGCCAAAAAGATGCAAGAGTACTGTGAAATAAAGGTTGAATGCCGGAGACAAACTTTACTCAAACACTTTGGAGAATCTTTTGATAGAAAAGCCTGCAAGTATGGATCTAGCCCCTGTGATAACTGTCTCAAGACTGTATTATGAGTTGCTACCCGATCAATGTCAAGTCTGGTACGCTCTAACCAACTTTGAACTTTGTGGAGTAGTACCTATTGCGTTTTTGTCCTTTAGATTTTATGGGTTACCCGTTGAAAAGTCAAAATCTCTTTCTAGGTCATTAATTTTCAGACCTACGTAGAAGAAAAATGTCGAACCAAGATGTACCAA 2049 0.4305 MGSSSRKKKQDVELERVRLISLALDFGFDESSANKCLNRLIALYGEDGRDFITVEHCGDDFLAALAESMQTEDWDDLQEMESQACGTLSHVLDKTLPTSSNADNYPASTSFIDIDDDSPQPKKRKRHANVVELDSSDDEDKYCSASREKSLDHRSGITQGSVSSTSSKRQSSFASRDKSSTLTYKELQALDDIELANVVIFGNRTFRPLQHQACKVALSKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNFKFGIPATFLNSQQTASQATAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILKCMHWKGQLSGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPDVPVMALTATATHAVREDILNALRIPRALVLERSFDRPNLKYEVIGKTKEPLKQLGQLLIDRFGNQCGIVYCLSKSECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQRKWHEGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLASVCIALYQKKDFSRVVCMIRNGQGYKKERFKTAMAQAKKMQEYCEIKVECRRQTLLKHFGESFDRKACKYGSSPCDNCLKTVL 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01251 607 FunFam ATP-dependent DNA helicase 398 605 - -
Pste4g01251 607 CDD DEXHc_RecQ 200 397 - -
Pste4g01251 607 MobiDBLite consensus disorder prediction 116 154 - -
Pste4g01251 607 Pfam Helicase conserved C-terminal domain 415 521 IPR001650 -
Pste4g01251 607 MobiDBLite consensus disorder prediction 155 175 - -
Pste4g01251 607 SMART ultradead3 202 406 IPR014001 -
Pste4g01251 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 245 543 IPR027417 -
Pste4g01251 607 CDD SF2_C_RecQ 398 531 - -
Pste4g01251 607 Gene3D - 162 397 IPR027417 -
Pste4g01251 607 PANTHER DNA HELICASE RECQ FAMILY MEMBER 186 603 - -
Pste4g01251 607 Pfam DEAD/DEAH box helicase 208 376 IPR011545 GO:0003676|GO:0005524
Pste4g01251 607 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 329 338 IPR002464 -
Pste4g01251 607 SMART helicmild6 440 522 IPR001650 -
Pste4g01251 607 FunFam ATP-dependent DNA helicase 187 397 - -
Pste4g01251 607 Gene3D - 398 606 IPR027417 -
Pste4g01251 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 390 IPR014001 -
Pste4g01251 607 MobiDBLite consensus disorder prediction 107 175 - -
Pste4g01251 607 Pfam RecQ zinc-binding 534 603 IPR032284 -
Pste4g01251 607 NCBIfam RecQ family ATP-dependent DNA helicase 200 605 IPR004589 GO:0004386|GO:0006310
Pste4g01251 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 415 570 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01251 Pste-Chr4 9183477 9191008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01251 331 520 Eukaryotic Initiation Factors Gene Family AT5G11170 27.461 1.71e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01251 4 9183477 9191008 Pste4g01251 4 9183477 9191008 ECH