Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01246 AAAGAATGCATAAACTAGTGTTTAACACGAGGACCATGGAAGAATTTTTACAATAGCATGTTAATAATCATCTGACACAAGGTGTATGGATGGTGAAGAACTGTGATGGCACGTGAGCTTGGGTTGATGCCTTGATGGTGAAGGTGGATCACGTGAGAGGCGATGAATCGATCTTTCTTTCTGGTTTGACTGTTACGAAACCACGGAGCATTTCATTGATTTGTTCGGGATCTGAATGGCGACGAGAAATCGTACTTTACTTTTCAGAAAACACAGAGATGCGTTGAAAAGTGTTCGACTTCCCTCTATCTCATCGTCGTCGACGGCTTCCGGCACCGGCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTCCTCAATCCCAATCGCTCTTACGCTCCGCTCAGTACCGAGGATCCCACTAATTCAAGGGGTCCAAATGCAATTACTGTGGGGCTACCCCCGGCGTGGGTTGATTTATCAGAAGAAATATCGGCAAATGTGCAACGTGCACGCAAGAAAATGGGAGAGTTGGCCAAGGCTCATGCAAAGGCTTTGATGCCGTCATTTGGAGATGGTAAAGAAGACCAACATGCTATTGAGACTCTAACTCATGACATAACTGACTTAATAAAGAGGTCAGAGAAGAGACTGCGGAGACTTTCTGCTACTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTCCGCAAGAAACAATCAGCTTATTTAAAGCGCCTCAGACTGCAAAAAGAGGGTCAAGATGGAGTTGATCTAGAGATCAACTTAAATGGAAGTAAAGCCAGATATGAAGATGATGACTTGGATAATATGGTATTTAATGAACATCAAATGGCCAAGCTGAAAAAAAGTGAAGCCTTCACAGTGGAAAGAGAGAAAGAGATCCAACAGGTTGTGGAATCTGTGAATGAGCTTGCTCAGATTATGAAGGATTTATCGGTACTAGTCATAGATCAGGGAACCATTGTTGATAGAATAGACTACAACATTCAGAATGTTGCAACCACAGTTGAGGATGGCCTTAAACAGCTGCAGAAGGCAGAAAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCTACCGTGCTTCTCATAATGTGCTTCGTCATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTAATCCATGATGCTATTCGATTTATTTTTAATATTCGACCTCCTCTCATTGGTGTGACCTTTCATTTAACGCCAATATCCCTTGCTTACGCGGATAGCAACGCAGCTTGTCTTTAGAGAAGACCAAGCAGTTTTGGAGCAGAGAAGCCATACTTTTTGTTTTACAACTGGGGAGGTAGGGTGGAGTATGTGTTATAGGCACATGAACTTTAGAGGTTGGTGTGGTATAGTAGGAAAGGATACGTAAGGGCAGAAAATGTATAGAGCGGTTGTGTGAACCTCTACTTAAACATTATTTACCTGTGGAACCGGGGGCTTTGTTCCGTTTCATACATTATTACATTTTTCTTTTCTTTGATTGATTAAGGAGTTATAAATTTATTGATTGATG 1600 0.4269 MATRNRTLLFRKHRDALKSVRLPSISSSSTASGTGGGPVIELVSTSLLNPNRSYAPLSTEDPTNSRGPNAITVGLPPAWVDLSEEISANVQRARKKMGELAKAHAKALMPSFGDGKEDQHAIETLTHDITDLIKRSEKRLRRLSATGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSAYLKRLRLQKEGQDGVDLEINLNGSKARYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLIIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01246 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Pste4g01246 325 Gene3D - 76 283 - -
Pste4g01246 325 CDD SNARE_syntaxin16 234 290 - -
Pste4g01246 325 FunFam Syntaxin-43 76 283 - -
Pste4g01246 325 PANTHER SYNTAXIN 83 310 IPR045242 -
Pste4g01246 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Pste4g01246 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Pste4g01246 325 SMART tSNARE_6 224 291 IPR000727 -
Pste4g01246 325 Pfam SNARE domain 265 317 IPR000727 -
Pste4g01246 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01246 Pste-Chr4 9129574 9134692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01246 1 314 SNARE and Associated Proteins AT3G05710 76.543 0.0 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01246 4 9129574 9134692 Pste4g01246 4 9129574 9134692 ECH
Pste5g02748 5 19696010 19698342 Pste4g01246 4 9129574 9134692 ECH