Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01242 GGAAAAAGCAGAGAAAGAAAAACAAGGGAAAAACCTCAGTTGCGGAGAGAAACATAATCTGGAATTCAAGAAGCAAATTAATAATTTGCGGTTGCTTTGTTCCTCCTCTCGCAGGTAACTCAATCCTTATCTTCTCCGTCCCTTTCTCTTCTTGTGGCTAGTTTTCCTCTCTTTAGAAGATTCCACTTCAACGCTATATCTCCTCGCGTTTTAATTTCAATAAATATCTTCTTCCCTTTTTATCTTTTCAATTACTGCTCAGTCTTTGATTCATGGGTTTTTTTTCTCTTCTGTCTCTCCTTAATTTTACTTTTCTTCTCCTGAGGCTTATTCCCAACAATTCCTGGTAAATGATGCCTTATTATTCATTATTTTTCCCTGCTGCTATTGATCGCTACTGTTTCTGTGTCTGGCGTAATCTCCTTCACTTCATGAGGAAACAAATTGTGGGATCTCTCTAGTTAATTTCGTCCCTATTATATATTTTGTAGATTGGTGAATCAGATCCGTGGTAGGTTGATTTATGAATGCTGCTGTTTCCCTACCCGGTAGCAATAATCTTAATGCCCCATTTAGGGTTGAGTTGATAAGGGAAAACCTGTGTTGAAGAATCACCCAATTTATAACAATATATATGATTTGATATGATTTTGTTGTTTGTGAAGCTTTTATTTATTTGTTTTGCCCTTGACTTGAATGTGGTTTTTAATATATTGGTGTTCTTTTTGCTGTCTGTTTGTGTGTGAGAGCAGATGGTAAGGGGAGGAAGGGTTAGTGGCAAACGCAATTTCAGAAAGAGGGTTTGCTCAAAGGAAGGAGGTTCTGATGATTCAGATGAGGACTATGTGGTTTCAGATGAAGGTAGAGAGGCATCTGACTTCTATTGCTCCTCGTTAGATGGCTGTGCATCAGAGGAGAGTTTTGATAGTTTTATGGAAGAAGAGGAGGAGGAGGAATTTCGAAGAGTGAGGAGTTTCAAAAGATCCAAGGCGAAAAAGGGCATTGTTGGTCAGCAGGAAAATGGCAATAAAAACTCACACAAGAGGGGAAGGATTACGTATGTAGAAGAAGAGGAGGAGGTGGAGGATGAAGAAGAAGATGAGTATGAGGAAGCAGATGAAGGAGAAGAGGAAGAGGAAGACGAAGAATACAAAGAAGAGGAGGGGGAAATTCAAGAAGTGAGGAATTTCAATAGGTCAACGATAAAAAATGGTATATGTGATAAGAAAAAACATGCAGGTAAAATTTCGCCAAAGAGGGGGAGGAAAATACGTGCTGAACAACAGGAAGAAGAGGAGGAGAGGGTGCAGGAGGACAAGGAAGAGGAGAAGGTGGAGGTGAAGATGGAGAGAGGTGGAGATGAGGAAGAAGGACAGGAGGGAAATAGGGATGGAGACGATGAAGATTTTGACTATGATGATGAGGACGATGAATTTTTGCCAGAGGAAGAAGATTATTCAGATGAGGAAGAAGAAATGAAGGGGAGAAAGAAGAAAAATGATGGCATGAAAATTGAAAAGAAGATTTTGCAGAAGAAAAGGGCCTCCATGGTTTCTAGCAGGGGTCGAAAAAGACAGGCTTCTAGAGCATCAAAGAAGCCCTTGAGAAACAAAAGAAGAAAGAATGGGAGGTTAAGGAAGAAAGAAAGATTTAAAGAGGAAGATGATTTTATAGATAATGGCCCTACGATCAGGACAACAAGTAGGAGAAAACGGGGCCTGAAGAGAAGAATGCTTCTTTCCGATTCAGATTATGCATCTTCTGGATCATCTGATTTTGAGTTTACTATATCTGAAGAAGAGAGAGAACAGGTTAGAGAAGCCAAGAGATTGTGTAGAAATTTGAGAAATAACTTGAGGAGTTCATCCCATCTAATAAATAGTGAAGATGTTGGTGTCCATGAGGATGAAAATCAGCAGCGGAAGCCTCTAGCTCGAAAGGGTAAGGAAAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGGATTTAAAAAGTGAGATGGGAAAGCAAGTGTGTGGAATTTGCCTATCTGAAGAAAATAAAAGAAAAGTAAGGGGAGTACTAAATTGTTGCACTCACTTCTTTTGCTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAGTCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATTGTCAAGCGTACACGGTCAATGACAGGGATTGATTCAAGAGAAATGGTGTACCAAGTACCTGAACGTGATCAGGTGTATCAGCCCTCTGAAGAAGAGCTCAGGAGCTATATAGATCCATATGAATATGTTATTTGTTCTGAATGTCATCAAGGTGGAGATGATGGCCTCATGCTACTCTGTGATATCTGTGATTCCCCTGCACACACGTATTGTGTTGGTTTGGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGTTCCCAAGTTCAAGAAGGTGAGGCCGATCCAAGGCTAACAATCCAGAACCTTCCTTCTAGACAACCCCCTGTTCTACATGTACGAGAAAGCATAGACCTCAACCTGATTTCACCACCCCGTGCAGCTTTTAGTCAAGGGTTTGGGCATATTTCATCTTCTAGATTTAGTGGCAGAAGTGTCGAAGGAGCCTCTCCTGTGTCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACACCGTCAAATTCAACAACTACTTTCAATAGATAGGATGTCTTCTACACCTGGCAGAACTAACGGTATTTCAGGCACCAGTTCTACTAGTAACTTATATAGCTCTCAAATTGATCAGAGTAGGGGAACTGCCCCTCTACATGGAAGGACACAGGATGTGGGAACTTCGTACCACACATTTTTTGACGAGAGATTATGCAACAATACCCCTCCGTTAATGCACAATGGAACATTATGGCCTGGACTTATGGGGACACCTGCAGTACCAGATTGTGAACAAGTTCATCAGTTCAGCGGATCAAACATTGTCCCAGATGGTGGCGTATCCCCTGCTGTCAGAGAAGAGAGTAATATTCACATTGCAAAGGAGCAGTTACAGTCAATGGTTAAAAATCACCTGAAGAGTTTGTCTCAAAATATTGATTTAGGCCAAAGTACTTTCAAGGATATTGCAAGGAGTTGTATGCACACCATACTAGCAGCTTGTGATCTGGAGCACAAGAAAAGTGAAGTTTGCACTGTGCCTCCACCAACTGCCTGTCCGCACATGGAACTAATGGCTGGTGGGCAAACGAGTCTGATTAAAGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTCAAGAGGATTTTGGACACAAGAATTTCGTCACAGTGGTTACGATTAGGTCTTTAGGCATAAAATCATTGCAATGTGTCCAAAGACACACCTTTTTGTTAGTTCAGAAAGACAAGAACATTTCATTTACTTGTTTATACATATATATGAATATGAT 3483 0.4114 MVRGGRVSGKRNFRKRVCSKEGGSDDSDEDYVVSDEGREASDFYCSSLDGCASEESFDSFMEEEEEEEFRRVRSFKRSKAKKGIVGQQENGNKNSHKRGRITYVEEEEEVEDEEEDEYEEADEGEEEEEDEEYKEEEGEIQEVRNFNRSTIKNGICDKKKHAGKISPKRGRKIRAEQQEEEEERVQEDKEEEKVEVKMERGGDEEEGQEGNRDGDDEDFDYDDEDDEFLPEEEDYSDEEEEMKGRKKKNDGMKIEKKILQKKRASMVSSRGRKRQASRASKKPLRNKRRKNGRLRKKERFKEEDDFIDNGPTIRTTSRRKRGLKRRMLLSDSDYASSGSSDFEFTISEEEREQVREAKRLCRNLRNNLRSSSHLINSEDVGVHEDENQQRKPLARKGKEKIEEPQGRKGKEKVEDLKSEMGKQVCGICLSEENKRKVRGVLNCCTHFFCFACIMEWAKVESRCPLCKQRFKTIVKRTRSMTGIDSREMVYQVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEGEADPRLTIQNLPSRQPPVLHVRESIDLNLISPPRAAFSQGFGHISSSRFSGRSVEGASPVSGGAPTLSERRWIHRQIQQLLSIDRMSSTPGRTNGISGTSSTSNLYSSQIDQSRGTAPLHGRTQDVGTSYHTFFDERLCNNTPPLMHNGTLWPGLMGTPAVPDCEQVHQFSGSNIVPDGGVSPAVREESNIHIAKEQLQSMVKNHLKSLSQNIDLGQSTFKDIARSCMHTILAACDLEHKKSEVCTVPPPTACPHMELMAGGQTSLIKGCCSSCFDSFVGDVVKRILDTRISSQWLRLGL 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01242 876 CDD RING-HC_Topors 423 470 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 208 238 - -
Pste4g01242 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 380 473 IPR013083 -
Pste4g01242 876 ProSiteProfiles Zinc finger PHD-type profile. 515 564 IPR019787 -
Pste4g01242 876 MobiDBLite consensus disorder prediction 106 137 - -
Pste4g01242 876 SMART PHD_3 517 562 IPR001965 -
Pste4g01242 876 SUPERFAMILY RING/U-box 424 473 - -
Pste4g01242 876 ProSitePatterns Zinc finger RING-type signature. 444 453 IPR017907 -
Pste4g01242 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 481 565 IPR013083 -
Pste4g01242 876 MobiDBLite consensus disorder prediction 378 414 - -
Pste4g01242 876 SUPERFAMILY FYVE/PHD zinc finger 489 563 IPR011011 -
Pste4g01242 876 Pfam PHD-finger 517 563 IPR019787 -
Pste4g01242 876 Coils Coil 347 367 - -
Pste4g01242 876 Coils Coil 104 131 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 662 682 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 189 207 - -
Pste4g01242 876 SMART ring_2 425 466 IPR001841 -
Pste4g01242 876 MobiDBLite consensus disorder prediction 266 295 - -
Pste4g01242 876 PANTHER F18C1.6 PROTEIN 168 865 - -
Pste4g01242 876 Coils Coil 172 195 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 69 298 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 239 262 - -
Pste4g01242 876 Pfam Ring finger domain 424 467 IPR001841 -
Pste4g01242 876 ProSiteProfiles Zinc finger RING-type profile. 425 467 IPR001841 -
Pste4g01242 876 MobiDBLite consensus disorder prediction 1 35 - -
Pste4g01242 876 MobiDBLite consensus disorder prediction 375 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01242 Pste-Chr4 9107112 9111060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01242 512 561 C2H2 Transcription Factor Family AT3G01460 46.154 2.32e-08 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pste4g01242 PHD 4.4e-09 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01242 4 9107112 9111060 Pste4g01242 4 9107112 9111060 ECH