Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01221 ATGGATCCTGTTGAGCAAATTTCTGAAGAATGGAGTTCTCTCAGTGGATTGTACACAGCCGAGGAAGCTGACTTCATGAGAAAGCTACTTGGTAACTGCTCACTCCCTGAGAACCTGTGTGGAAATTTCAATTTGGGAATTCCATCTGCAATATGGCCTGGCCATGAATCAACAATAGTGAGCGTGACAGGGATCAATAAAAGTCATTGTTTTCCTATAAATGCTGATAGTATCAATACTAATTATTTATGTTTTTCACAAGGAAGTAGTGCTACTACTGATAGTAGCAATATACTTCCTACTACAAGTGGTGATAAATATTGCTTGAGTGATCCAGTATCCAATATTGACTACATGTCCATGGGTTTTGCCAATGTTCAAGGGAGTGACAACCAACAGATAAATGAAAATACTGATGAAGAGTTAGGTCTAGTCGTTATCGTTGACAAGAATGTGCAGGATCAACAGGAATGTGAAGTACTAGTTTCTGAAGCAGCACAAGAGGATATCAATACTAATGTGGAGAAGTCAGGAAAAAGATCTAGGGGCTCAATGCAGGGACGAAAGAGCAAGAAAAATGCTAAATCTATGAAGAAACCAAAGTCTGATTCTGTAAGTAACTCTGAAGAGGTTAGAAGTCCTGATCTTCAGGGTTGCTACTCAGAGGATGATGACTCTAATGCTTCTCAAGAGCTAAATGGAGGAGGATCTTCAAGTTTGAGCCAGGAGGATTCTACATCTCTAAAGCTAAAGGAGAAAAAATCAACTTCTAATAGAGTTTCTGCTACTGATCCACAGAGTGTATACGCAAGGAGAAGAAGAGAAAGAATAAATGAAAGGCTGAGAATCCTACAAAACCTAGTCCCCAATGGAACCAAGGTGGATATCAGCACAATGCTTGAGGAAGCTGTCCAATATGTGAAGTTTTTACAGCTCCAAATTAAGCTTCTGAGCTCTGATGATCTCTGGATGTACGCTCCCATTGCTTACAATGGAATGAACATTGGACTAGACCTCAATCTAACTCCAACCAAACAACCGTAACTACGAAAGGGTTGCGGAAATTTGAGAGCTAATGGTGCCTTTTGGCATTTTGAGATGTTTCTGTTCTGTTCATAGTTATGTAGCATTTAATCCTAAGGAAAGTGTAAGATTAATTAATCAAACCAACCTTATGTCTACG 1183 0.3939 MDPVEQISEEWSSLSGLYTAEEADFMRKLLGNCSLPENLCGNFNLGIPSAIWPGHESTIVSVTGINKSHCFPINADSINTNYLCFSQGSSATTDSSNILPTTSGDKYCLSDPVSNIDYMSMGFANVQGSDNQQINENTDEELGLVVIVDKNVQDQQECEVLVSEAAQEDINTNVEKSGKRSRGSMQGRKSKKNAKSMKKPKSDSVSNSEEVRSPDLQGCYSEDDDSNASQELNGGGSSSLSQEDSTSLKLKEKKSTSNRVSATDPQSVYARRRRERINERLRILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMNIGLDLNLTPTKQP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01221 347 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 326 IPR036638 GO:0046983
Pste4g01221 347 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 261 310 IPR011598 GO:0046983
Pste4g01221 347 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 107 334 - -
Pste4g01221 347 MobiDBLite consensus disorder prediction 171 273 - -
Pste4g01221 347 Pfam Helix-loop-helix DNA-binding domain 271 311 IPR011598 GO:0046983
Pste4g01221 347 Gene3D - 264 324 IPR036638 GO:0046983
Pste4g01221 347 SMART finulus 267 316 IPR011598 GO:0046983
Pste4g01221 347 FunFam Basic helix-loop-helix transcription factor 262 319 - -
Pste4g01221 347 MobiDBLite consensus disorder prediction 209 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01221 Pste-Chr4 8958099 8959727 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01221 10 341 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G14760 37.363 4.81e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01221 HLH 7.8e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01221 4 8958099 8959727 Pste4g01221 4 8958099 8959727 ECH