Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01220 ATGTCGACTGAGCCGCTGATTCAACCGTTGGATGCATTATCAGCATCTCACCCCTCCCGGCGATGCGGCGAATCGGCGTTGATTTTCGAAGAGTTGCCGGCGGCCACCGTCGTTTCCGTGTCCAGACCCGACACCGGAGACATTAGCCCGATCCTCCTTTCTTATACCATTGAGTTGCAGTACAAACAGGCACACACACTTTTTTTTTCCCACCGTGATTGTTACATTTGTATTCCACAGTTCAAGTGGCGTCTAGTGAAGAAGGCATCACAACTTCTCTATTTACAGTTCTGTTTGCGGAAGCGTGCATTAATTGAAGATTTTCATGACAAGCAGGAGCAGTTAAAAGAATGGCTTCAAAACTTAGGAATAGTAGATCAAACCGTAATGGTGCAAGATGATGAAGAACCTGATGATGGAGCTATGCCTTTACATCATGAAGACAGTATTAAAAACAGATATGTTCCATCTGTTGCTGCTCTATCAATAATTCGTCCATCAATAGGAGGGCAACAGTCAATTGCAGATAGAGCCAAAGTCGCAATGCAGGGCTATTTGAATCAATTTTTAGGAAACCTGGATATTGTGAATTCTCAAGAGGTCTGCAGGTTTTTGGAAGTCTCCAAGCTATCCTTTTTAAAGGAGTATGGTCCAAAACTGAAGGAGGGATATGTAATGGTCAAGCATTTGTCAAATATTTTACAGGATTCAGATGTATCATGCTTCCCATGCAATTGGTTTCGTTGTTGTAATAACAACTGGCAGAAGGTATGGGCTGTTTTGAAACCTGGGTTTTTGGTCTTCCTGGATGATCCTTTCAACAACAAACCACTGGATATAATTATTTTTGATATCCTCCCTTCCTCAAATGGAGATGAAAGGACCAAAATGTTTTTAGCTGATCCTATAAAAGAACGCAATCCTTTGCGTTACACATTCAAGGTTACCAGTGGAAATAGAAACTTATTGTTGAGAACTACCAGCAGTGCTAAAGTAAAAGCTTGGGTTACTGCAATTAATGAAGCTAGTCTGAGGCCTCTTGAGGGTTGGTGTTGTCCTCATCGCTTTGGTTCCTTTGCTCCCATAAGAGGTTTGACTGAAGATGGGAGCCAAGCCCAATGGTTTGTAGATGGACAGGCAGCATTTGAAGCAATTTCTTCTTCGATTCAAGATGCAAAGTCAGAGATCTTCATTACAGGTTGGTGGTTATGCCCAGAGCTATATCTTAGACGACCGTTTCATAGTTTTTCTACCTCTCGATTGGATTCATTACTAGAAGAAAAGGCAAACCAAGGGGTTCAGATCTATGTGCTTCTCTACAAGGAGGTCTCTCTAGCTTTGAAAATCAACAGCTTGTACAGTATGAGAAGACTGCTCAAAATTCATGACAATGTGAGGGTATTGCGCTATCCAGATCATTTTGCTGCTCGTGTGTATTTATGGTCACATCATGAAAAACTTGTAATTGTTGATTACAAGATTTGCTATATTGGAGGATTAGATTTATGCTTTGGTCGATATGACACACCTGAACATAAAGTGGGTGACTGTCCTTCTGTAATTTGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAGCCAAATTCATGGGAAGACACCATGAGAGATGAATTGGATCGCAAGAAATATCCCCGTATGCCGTGGCATGATGTCCATTGTGCTCTTTGGGGACCTCCCTGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAACCATGCCAAGAGAACTAAAGCTCCAAATGAACATGCAATTCCACTACTTATGCCTCACCATCACATGGTCATCCCTCATTACATGGGAAAAAGCAAAGAGTTAGACATTGATGAAAAGAAAGCTCAAAACAAGTGGAAAGAAATTGAGAGGCAGGATTCATTTTCCTCGGAATCTCCAATGCAAGATATACCACTACTTTTACCTCAAGAAGCTGATGGACTAGATACATCAAAAGGAGATCATACAAATTCAAGTGAAAATTCTCCATTATTGTTCCAAAAGCCCGAGTGTGAAACTTTAGTTTCAAACACCCAGATGAATGGTTTTCAAGATGAAGTTGTTCCTTTAAACTTGGGAGCACAACCTGTTGTTGATGGTCTAGGTGATTGGTGGGAAACACCAGAAGAAACCCATGATGACACTACTTTGGAATATGGACAAGTTGGTCCACGTACGACCTGTCACTGTCAGGTAATCAGAAGTGTCAGCCAGTGGTCTGCTGGAACAAGTCAGCCTGAAGAAAGCATTCACACTGCATATTGTTCTCTTATAGAAAAAGCAAAGCATTTTATCTACATTGAGAACCAATTTTTCATATCAGGTCTAGCAGGAGATGAAATAATACTGAACCGTATATTGGAAGCACTATACAGGCGTATTTTGCAAGCCCACAAAGATCAGAAAGATTTTAGAGTTATAATTGTGATGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCTACAGTCAGAGCGTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAAACACTCCATATTACACAATCTTGAAGCTATACTTGGTCCTAAGACTCATGATTATATTTCTTTCTATGGTCTACGATCTCATGGTAGACTTTATGATAATGGCCCTATGGCTACAAGTCAGGTATATGTGCACAGTAAATTGATGATAATTGATGATCGTGTAGCTTTTATTGGATCATCCAATATAAATGACCGCAGTTTGCTTGGATTAAGAGACTCTGAGATCGGAGTGCTTATAGAAGACAAAGAATATGTTGAATCATTGATGAATGGAAAGCCATGGAAGGCTGGGAAATTTTCCTTTAGCCTCCGCTGCTCCCTATGGTCTGAGCACCTTGGTCTTCATGCTGGAGAGATCAGTAAAATCAGTGATCCGGTGGCAGATACAACCTACAAGGACTTGTGGTCAGCAACTGCGAAGGAAAATACTAGGATATACCATGAGGTCTTTGCTTGCATTCCCAACGATCAGATACACTCGAGAGCTGCACTTCGGCAAAGCGTGGCTCACTGGAAAGAAAAACTCAATCATACCACCATAGATATGGGAATAGCCCCTGATAAGTTAGTCTGTCATGAAAATGGAGAAATCAAAACAATAGACCCGATAGATGGGTTGAAGTCTGTGAAGGGACATCTTGTTTCCTTTCCCTTGGAGTTCATGCGTGAGGAAGATCTACGACCAGCTGTTATTGAGAGCGAGTTTTATGTTGCTCCTCAAGTATATCATTAAGTATGGTAGTTTGGAGGCTCAAAAAAGAGGAGATTTAAGGGATTTTTCACGTAAATAGAGGACTATTGCTTTGTGGTTACCTCTCGAATAATAATTTATAGAGAAATGAGGAAGATAGGCTTGGAGTCATCAAAGGAATTGTCAAGGTTGAACACAATGGAAAAGAAAGAAAGCTGATGGAGGAAAAAAAGGATACATAAGATGGTTATAAATTGGATATGGCTGTTAACTACAGTTTAGAAAGAGAAGTGGTTACGCAGAATCCTTCTTGCTTAAAAAAACGAGTATGGTCAGTAACTGTGGGAAGTATGTGAAAATCTTTGCAAATAACTCAGTTCTGGATTAAATGGCAAAAATACCAGAAGAATTTATGGCAATATGGCATGCAACCTTCATTGTTGTACAGCACTAATTATTTTTTCTTCTTCACGGAATCAGCCCTAATTGATTCATTGTAAAGGAAATTGTATATATATTCTTCTTCCGTTTGACCTGGGAATTGTCCATGTAACATTCTTT 3798 0.4057 MSTEPLIQPLDALSASHPSRRCGESALIFEELPAATVVSVSRPDTGDISPILLSYTIELQYKQAHTLFFSHRDCYICIPQFKWRLVKKASQLLYLQFCLRKRALIEDFHDKQEQLKEWLQNLGIVDQTVMVQDDEEPDDGAMPLHHEDSIKNRYVPSVAALSIIRPSIGGQQSIADRAKVAMQGYLNQFLGNLDIVNSQEVCRFLEVSKLSFLKEYGPKLKEGYVMVKHLSNILQDSDVSCFPCNWFRCCNNNWQKVWAVLKPGFLVFLDDPFNNKPLDIIIFDILPSSNGDERTKMFLADPIKERNPLRYTFKVTSGNRNLLLRTTSSAKVKAWVTAINEASLRPLEGWCCPHRFGSFAPIRGLTEDGSQAQWFVDGQAAFEAISSSIQDAKSEIFITGWWLCPELYLRRPFHSFSTSRLDSLLEEKANQGVQIYVLLYKEVSLALKINSLYSMRRLLKIHDNVRVLRYPDHFAARVYLWSHHEKLVIVDYKICYIGGLDLCFGRYDTPEHKVGDCPSVIWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPPCRDIARHFVQRWNHAKRTKAPNEHAIPLLMPHHHMVIPHYMGKSKELDIDEKKAQNKWKEIERQDSFSSESPMQDIPLLLPQEADGLDTSKGDHTNSSENSPLLFQKPECETLVSNTQMNGFQDEVVPLNLGAQPVVDGLGDWWETPEETHDDTTLEYGQVGPRTTCHCQVIRSVSQWSAGTSQPEESIHTAYCSLIEKAKHFIYIENQFFISGLAGDEIILNRILEALYRRILQAHKDQKDFRVIIVMPLLPGFQGGLDDGGAATVRALTHWQYRTISREKHSILHNLEAILGPKTHDYISFYGLRSHGRLYDNGPMATSQVYVHSKLMIIDDRVAFIGSSNINDRSLLGLRDSEIGVLIEDKEYVESLMNGKPWKAGKFSFSLRCSLWSEHLGLHAGEISKISDPVADTTYKDLWSATAKENTRIYHEVFACIPNDQIHSRAALRQSVAHWKEKLNHTTIDMGIAPDKLVCHENGEIKTIDPIDGLKSVKGHLVSFPLEFMREEDLRPAVIESEFYVAPQVYH 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01220 1092 SUPERFAMILY Phospholipase D/nuclease 722 938 - -
Pste4g01220 1092 Pfam PH domain 221 343 IPR001849 -
Pste4g01220 1092 SMART PH_update 219 346 IPR001849 -
Pste4g01220 1092 Gene3D Endonuclease Chain A 703 948 - -
Pste4g01220 1092 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 479 506 IPR001736 GO:0003824
Pste4g01220 1092 PIRSF PLD_euk 11 613 IPR016555 GO:0004630|GO:0006654|GO:0048017
Pste4g01220 1092 PIRSF PLD_euk 605 1092 IPR016555 GO:0004630|GO:0006654|GO:0048017
Pste4g01220 1092 Gene3D Endonuclease Chain A 365 612 - -
Pste4g01220 1092 CDD PLDc_vPLD1_2_yPLD_like_1 372 517 - -
Pste4g01220 1092 Pfam PLD-like domain 761 935 IPR025202 -
Pste4g01220 1092 CDD PH_PLD 196 342 - -
Pste4g01220 1092 SUPERFAMILY PH domain-like 249 344 - -
Pste4g01220 1092 ProSiteProfiles PH domain profile. 218 344 IPR001849 -
Pste4g01220 1092 SMART pld_4 479 506 IPR001736 GO:0003824
Pste4g01220 1092 SMART pld_4 888 915 IPR001736 GO:0003824
Pste4g01220 1092 PANTHER PHOSPHOLIPASE D 176 1076 IPR015679 -
Pste4g01220 1092 CDD PLDc_vPLD1_2_yPLD_like_2 748 932 - -
Pste4g01220 1092 SUPERFAMILY Phospholipase D/nuclease 333 599 - -
Pste4g01220 1092 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 888 915 IPR001736 GO:0003824
Pste4g01220 1092 Pfam Phospholipase D Active site motif 479 506 IPR001736 GO:0003824
Pste4g01220 1092 Gene3D - 219 345 IPR011993 -
Pste4g01220 1092 FunFam Phospholipase 721 942 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01220 Pste-Chr4 8949069 8959827 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01220 28 1092 Phospholipase D Gene Family (Wang group) AT3G05630 64.618 0.0 1387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01220 4 8949069 8959827 Pste4g01220 4 8949069 8959827 ECH