Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01201 AGTGTCCGAATTAAGATGAGCTGCAATGGTTGTCGTGTCCTGAGAAAGGGTTGCAGTGACGACTGCATGCTACGACATTGCTTACAATGGATAGAGAAACCACAAGCCCAAGGTCACGCCACCCTCTTCGTCGCCAAGTTCTTCGGCCGTGCCGCTCTCATGTCTTTCCTTTCCTCCGTACCCCCCAACCAAAGATCCGCTTTGTTTGAGTCACTGCTGTACGAAGCAGTGGGGCGTACTATAAATCCAGTGAATGGAGCAGTGGGGCTGTTGTGGACTGGGAACTGGCACCTCTGCCAAATGGGAGTGGAGAAAGTGTTGGGAGGTAATGCTGTGTTGACCCCACACTTCTTGGGTGCTGCTGTACATGAACAACACCATGTAACAAAGTCTGTGGAGGCTAAGAAGCAATCTGTGGGGACACCCTCA 429 0.5175 SVRIKMSCNGCRVLRKGCSDDCMLRHCLQWIEKPQAQGHATLFVAKFFGRAALMSFLSSVPPNQRSALFESLLYEAVGRTINPVNGAVGLLWTGNWHLCQMGVEKVLGGNAVLTPHFLGAAVHEQHHVTKSVEAKKQSVGTPS 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01201 143 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 6 118 - -
Pste4g01201 143 ProSiteProfiles LOB domain profile. 6 112 IPR004883 -
Pste4g01201 143 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01201 Pste-Chr4 8829750 8832498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01201 6 118 AS2 family AT3G49940 72.807 2.49e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste4g01201 LOB 8.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01201 4 8829750 8832498 Pste4g01201 4 8829750 8832498 ECH
Pste1g02119 1 6706244 6707290 Pste4g01201 4 8829750 8832498 PCT