Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01158 CTCAAATTTGGCGGGACTGAGTCACAGCATGACTGTCAGTTTGTAGCAAATGAATGCGATGGACGGACAGTCCAAGATATTCGACCACTTCCACTCCAACCCAATGGGAATTGATCCCAATCCAACCGTGCTTTCTCAGCCTTTTGAAGCTGATGATTTGGATTTTACGTCTGATTTGGAGCATAGACTTAGCTATTTGATGCAAAAGCATTTTGGTTTTTCATCCTTGAAGACTTTTCAGAAGGAAGCCCTCTCTGCCTGGGTTGCTCATAAGGACTGTCTTGTCCTCGCTGCCACAGGATCTGGGAAATCTCTGTGCTTTCAGATTCCCGCACTGTTATCTGGGAAAGTGGTTGTTGTGATTTCGCCTTTGATAAGTCTTATGCATGACCAATGTTTAAATCTAGAAAGACATGAGGTCAGCGCTTGCTTTCTTGGTTCCGGGCAACCTGACTACACTGTTGAACAGAAAGCGATGAGTGGCATGTATAGTATTGTGTATATTTGCCCGGAGACTGTTTTAAGATTGATTCAACCACTGCACAAGCTTGCAGAAAGTCCTGGTATTGCTTTATTTGCAATTGATGAGGCACATTGTGTTTCTAAATGGGGTCATGATTTTCGTCAAGATTACGGACGACTGTCTGTGCTGAGGGAAAATTTCAGTAGTAGCAAGCTAAAATTCCTGAAATATGATATACCTCTGATGGCCTTGACAGCTACAGCCACAACAAGAGTTCGAGAAGACATTTTAAAATCATTACACATGTCAAAAGAAACAAATGTTGTTCTTACATCATTTTTTCGATCTAATTTACGCTTCATGGTTAGTTTGTTGATTTTAACTTGTATATCTCTGAATATATCATCTGTTGTTGTACTTAAGATTCACTATGGATTCATACAGGTAAAGCATAGTCGAACATCACGGGCTTCTTATGCAAAAGATTTTCATGAACTGATTCAAGTATATGGTAGAAAGCAAAATGTCAAAGGAAATGAAAAGGCTTTCATTTCAGATAACTTTTCTAATAAATCTGATGCTAGTAGTAGCTCTGATACGGACAGTGTTTCACCTGATGACGTTGATGACAACCAAGATGATAATGCTTATAGACATATTAATACATTGCACTCAGTCAACACGGATGAATTTTTAAAGGGACAAGAGTTGTCTGTTGAGTTCCTGGAAGATGATATTGATGGGTTTCAAAGTGTGGATAACTCAGATGTTAACCATGGTGAATTTTGTGTACAACCTCCTTGCAAGGAATGGGAATTATCTGAGACAAATGATCCACCTAAGAAACAAGAAAGAAGACTTAAAATTCTTGAAGAGCCTTTGGAACAAGGACCTGCAATCGTATACGTACCCACCAGAAAAGAAACACTGGAAATTGCAGAGTATCTATGCAAGTTTGGTGTGAAGGCTGCTGCTTATAATGCAGGGCTTCCCAAATTGCATTTACGAAGGGTTCATAGAGAGTTTCATGAAAATTCTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCATTATGGTTGGCCTCAGAGTTTGGATGCCTACTACCAAGAAGCTGGGCGGGCTGGTCGAGATGGGAAATTAGCATATTGCATTCTGTATGCAAACTTAGCAAGCAAGCCATCACTTTTGCCTAGTCGGAGAAGTGATGATCAGATAAAACAAGCATATATCTTGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCTTGCTGTCGAGCAAAGACACTCGTTGAGTACTTTGGAGAGGATTTCGGTCATCAGAAATGTCTCTTATGTGATGTGTGCATTGATGGTCCACCTCAAAGGCAGGATGTAAAAGAGGAGACCAGTATTTTCCTGCAAGCTATAGGTTGCCATATGGAGCGTAGGGATCCCATGGCTTTCTCATTTGATGATGATATACATTTTGAGTCCAAACATAGAGGACTAAGAGAGAGACCAAATCTTAACATGTTGGTTGGAAAAATAAGGCAGCAGTCTCGAAAGTATGTAACCACTGATACATTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGGGAAGGGCATGCCAAGACCCATGTTCAGGCAAAATACCCAGAACTAACAGAACTGGGATTGGAATTTGCGAACTCTATGAGTGGGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGGAAAACTAACAAGCCATTTTCCTCATTCTCGGAATACGGAAAAGGTTGGGCTGATCCTGAGATACGTCGCCAGCGTCTGGAAAGAATGCGAGTCAATAGAAAGCCAGGGAAGCTGCGAATGCCCAAAAAGCAACGAAAGAGAAAAGCTAATAAACTGCGACCTGATTTGAGGACTTCTCGTGGTAGACTAGCCGCAAAACTGTCAACATTCAAGTGATACTGTTTTGGTATACTTTAGTCTACAAAACTGTAGTATACTTTTCATATATCTTTATCTGGAAAATGACAATATTTTTTGTTATTTGATAATGCAATGAGTATTTGTGGTACTAATGATAAGCTC 2590 0.4 MNAMDGQSKIFDHFHSNPMGIDPNPTVLSQPFEADDLDFTSDLEHRLSYLMQKHFGFSSLKTFQKEALSAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLNLERHEVSACFLGSGQPDYTVEQKAMSGMYSIVYICPETVLRLIQPLHKLAESPGIALFAIDEAHCVSKWGHDFRQDYGRLSVLRENFSSSKLKFLKYDIPLMALTATATTRVREDILKSLHMSKETNVVLTSFFRSNLRFMVSLLILTCISLNISSVVVLKIHYGFIQVKHSRTSRASYAKDFHELIQVYGRKQNVKGNEKAFISDNFSNKSDASSSSDTDSVSPDDVDDNQDDNAYRHINTLHSVNTDEFLKGQELSVEFLEDDIDGFQSVDNSDVNHGEFCVQPPCKEWELSETNDPPKKQERRLKILEEPLEQGPAIVYVPTRKETLEIAEYLCKFGVKAAAYNAGLPKLHLRRVHREFHENSLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLDAYYQEAGRAGRDGKLAYCILYANLASKPSLLPSRRSDDQIKQAYILLSDCFRYGMNTSCCRAKTLVEYFGEDFGHQKCLLCDVCIDGPPQRQDVKEETSIFLQAIGCHMERRDPMAFSFDDDIHFESKHRGLRERPNLNMLVGKIRQQSRKYVTTDTLWWRGLARILEVKGYIREGHAKTHVQAKYPELTELGLEFANSMSGQAFYVYPEADMLLARKTNKPFSSFSEYGKGWADPEIRRQRLERMRVNRKPGKLRMPKKQRKRKANKLRPDLRTSRGRLAAKLSTFK 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01158 804 MobiDBLite consensus disorder prediction 768 786 - -
Pste4g01158 804 FunFam ATP-dependent DNA helicase 411 538 - -
Pste4g01158 804 FunFam ATP-dependent DNA helicase 29 252 - -
Pste4g01158 804 Pfam Helicase conserved C-terminal domain 424 528 IPR001650 -
Pste4g01158 804 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 420 575 IPR001650 -
Pste4g01158 804 Gene3D - 544 721 IPR036388 -
Pste4g01158 804 FunFam ATP-dependent DNA helicase 540 718 - -
Pste4g01158 804 PANTHER DNA HELICASE RECQ FAMILY MEMBER 42 690 - -
Pste4g01158 804 CDD DEXHc_RecQ 51 251 - -
Pste4g01158 804 SMART ultradead3 56 261 IPR014001 -
Pste4g01158 804 Pfam RecQ zinc-binding 555 600 IPR032284 -
Pste4g01158 804 MobiDBLite consensus disorder prediction 763 804 - -
Pste4g01158 804 MobiDBLite consensus disorder prediction 326 340 - -
Pste4g01158 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 540 IPR027417 -
Pste4g01158 804 Pfam DEAD/DEAH box helicase 63 230 IPR011545 GO:0003676|GO:0005524
Pste4g01158 804 NCBIfam RecQ family ATP-dependent DNA helicase 51 261 IPR004589 GO:0004386|GO:0006310
Pste4g01158 804 MobiDBLite consensus disorder prediction 326 352 - -
Pste4g01158 804 Gene3D - 29 252 IPR027417 -
Pste4g01158 804 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 244 IPR014001 -
Pste4g01158 804 Gene3D - 410 538 IPR027417 -
Pste4g01158 804 SMART helicmild6 448 529 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01158 Pste-Chr4 8654115 8660182 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01158 420 547 Eukaryotic Initiation Factors Gene Family AT5G11170 26.562 1.69e-09 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01158 4 8654115 8660182 Pste4g01158 4 8654115 8660182 ECH