Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01146 TGGAAAATAGTAAAATTGGGGCGGAAATAGCAAAGCCCATTCAACACATGTGGCGTAGCCCAATATATTGGGTCTTACTGGCATCAGCTACGCCCGCCCCCGGTGCGCCAAACTCGAACCACTCTAAACGACGCGGCGGCTTCAATTTCCGAAGCATTATTCGAAGTTCCCACGGTTCCCGGGCTGTGATGGCGGAAACGACCGAAACCACGTCGAAAGAAAGCGTTCGCGAAGAAGAAGAAACCGAGGAACAAAGTTTCGAAGAGCTCGGCGTGGACGCTCGTCTTCTTCGCGCCTTACGCAAGAAGGGAATCGAGAAACCCACTCCAATTCAACGCGTCGCCATTCCTCTCATTCTGGAAGGGAAGGACGTGGTTGCACGCGCGAAAACAGGTTCAGGAAAGACGCTGGCGTATCTTCTCCCGTTGCTTCAGAAACTGTTCACCGCTAATGCTGATCGGAAGAAGCTTGCGCCCAATGCTTTTATTCTTGTCCCTACTCGCGAATTGTGTCAACAGGTGTACATGGAAGTGTTATCATTGGTTGAATTATGCAGAGTTCAGCTGAAAGTTGTGCAGTTGAATAGCAACATGCTTGCTAATGACTTGAGAGCAGCATTGGCTGGACCTCCTGATATTTTGATCTCCACTCCTACTTGCATAGCCAAGTGTTTGTCCAGTGATGTACTTAAGGCAGCATCCATTAATGCATCCCTTGAAACTCTTGTTCTCGATGAGGCAGATCTTCTATTATCATATGGGTATGAAGATGATATAAAAGCTTTTACACCTCACGTACCCAGAAGTTGCCAATGTCTTCTTATGTCTGCAACATCAAGCACGGATGTGGACAAACTAAAGAAGTTGATTCTACACAACCCCTTTATTTTGACTTTGCCTGAAGTGGGAAATCATAAGGATGATATCATTCCTAAAAATATCTCATGTACTGCCAGTGATAAGTTACTCTACATCCTTGCTGTGTTGAAGTTGGGGTTGGTCCAAAAGAAAGTTCTGATATTCACTAATACGATAGACATGAGTTTTAGATTGAAACTATTCTTGGAAAAGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTTGAGGAATTCAATGCAGGCCTGTTTGATTATCTAATTGCAACAGATCTTAGCCAGTCAAAGGAAAAGGATGAAGTGCCTAAGGAAAGTAATGTCGGATCACGGAAGTCTAGAAAACATGCTAAAATAAAATTAGATGCTGAGTTTGGAGTTGTAAGGGGAATTGACTTTAAAAATGTATACACGGTTATAAACTTAGAAATGCCTCAAAGTGTTGCGGGATATGTACATCGAATTGGACGTACAGGAAGAGCATACAATTCTGGCGCTTCTGTGTCTCTGGTTTCTCCAGATGAGATGGATACTTTCGAAGAAATTAAATCTTTTGTTGGGGATGATGAAAACAAAGACACAAATTCTATTTCCGAGTTTCCCCTCCTCACCAAGAATGCAGTTGAATCTTTACGGTATAGGGCAGAGGATGTTGCAAAGAGTGTAACTAAAATTGCTGTCCGAGAGTCACGAGCCCAGGATTTGAGGAACGAAATTTTGAACTCTGAAAAGTTGAAAGCCCACTTCGAAACTAATCCAAGAGACCTAGATCTACTGAAGCATGACAAAGTTTTGAGCAAGAATGCCCCACCTCCGCACCTACGTGATGTGCCTGAGTACCTATTAGACAAACCAACAAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAACAATCGCCGCAAGGGGTCCAAGAGAAAATTTAGAAAAGATGGAGACCCTCTGAAGGCTATCTCTGCTATGGCATCGAAAAGACCGGCCAAAGTTAGGAAGACTGGTGGAAACGATACCAAGAATAGCAATGATAGAAATAAACGCAAAAAGAGTAAGGGCATTTGATTGATTTGCCCGTTTCATGCAAAGCCTTATTATGACAGGCTCAATTTTGTTGTAATTTAGTTCGAAACTTAGTAACCTGAAAATAGTAGAGTATTGGAATTGTTGTTCCCTTTATACCGCAAGGGTCTGAAGATAGTATTTGTCATTGCAAAATCAAATTTTGCTTATTGGAACTATAATTTCGATTTTGTCTATATCTCGTTGCATGTGGAAGTTAGGTTAACACTAGAATGTCTTCCCACAATCCAAGACGTTACTGGAGTTCCATGGGGCCAAGCCAGTTTTCAT 2264 0.4262 MWRSPIYWVLLASATPAPGAPNSNHSKRRGGFNFRSIIRSSHGSRAVMAETTETTSKESVREEEETEEQSFEELGVDARLLRALRKKGIEKPTPIQRVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFTANADRKKLAPNAFILVPTRELCQQVYMEVLSLVELCRVQLKVVQLNSNMLANDLRAALAGPPDILISTPTCIAKCLSSDVLKAASINASLETLVLDEADLLLSYGYEDDIKAFTPHVPRSCQCLLMSATSSTDVDKLKKLILHNPFILTLPEVGNHKDDIIPKNISCTASDKLLYILAVLKLGLVQKKVLIFTNTIDMSFRLKLFLEKFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVPKESNVGSRKSRKHAKIKLDAEFGVVRGIDFKNVYTVINLEMPQSVAGYVHRIGRTGRAYNSGASVSLVSPDEMDTFEEIKSFVGDDENKDTNSISEFPLLTKNAVESLRYRAEDVAKSVTKIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPEYLLDKPTKEAREMVKLARDAMGNNNRRKGSKRKFRKDGDPLKAISAMASKRPAKVRKTGGNDTKNSNDRNKRKKSKGI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01146 642 Gene3D - 294 552 IPR027417 -
Pste4g01146 642 Pfam DEAD/DEAH box helicase 93 270 IPR011545 GO:0003676|GO:0005524
Pste4g01146 642 CDD DEADc_DDX56 76 283 - -
Pste4g01146 642 PANTHER RNA HELICASE 54 582 - -
Pste4g01146 642 MobiDBLite consensus disorder prediction 43 70 - -
Pste4g01146 642 SMART helicmild6 333 447 IPR001650 -
Pste4g01146 642 Pfam Helicase conserved C-terminal domain 304 447 IPR001650 -
Pste4g01146 642 Gene3D - 38 283 IPR027417 -
Pste4g01146 642 MobiDBLite consensus disorder prediction 619 633 - -
Pste4g01146 642 MobiDBLite consensus disorder prediction 582 642 - -
Pste4g01146 642 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 493 IPR001650 -
Pste4g01146 642 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 100 281 IPR014001 -
Pste4g01146 642 Coils Coil 517 537 - -
Pste4g01146 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 471 IPR027417 -
Pste4g01146 642 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 282 IPR027417 -
Pste4g01146 642 SMART ultradead3 88 294 IPR014001 -
Pste4g01146 642 CDD SF2_C_DEAD 298 456 - -
Pste4g01146 642 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 69 97 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01146 Pste-Chr4 8594060 8602029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01146 70 487 Eukaryotic Initiation Factors Gene Family AT3G19760 25.298 4.84e-32 127