Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01145 GTTCGAGTTGCAGGCGCAGAAGGGATCACCATTCACCCCTCTCAGGCCATCGTTTACTGTATCTAAGCTTTTTTGGATTCTTATTATCTCACACAGCTGTCTTCATTCCAACACTAACCGACGCGCGCCGCCGCTGCAACCTCAATCTCCGAACCATTACACCGCGGCCACCACCCTCACACATTCAAGTCACTAGCAATTCAATTCCTCTCATGCAACAGTAAATAGGGTTTGCTTTCGTGCTTCCTCAGTTAGGGTTCCGCTCGATATGGATCACTCGCGATCGGCGAACGGCGAGGACAATGCGTCGGGAATTCCCGACGATTTGCGGTGCAAGAGGTCCGACGGGAAGCAGTGGCGGTGCACGGCGATGTCGATGCCGGACAAGACGGTTTGCGAGAAGCACTACATCCAGGCGAAAAAGCGCGCCGCGAATTCCGCAATGAGAGCAAATCTCAAGAAGGCCAAGAGGAAGTCCCAGTCAATGTCGCTCGGAGAGTCTGATAACGTTTATTTGGAGAGTAAGAGCGATGATTTCAACGTTCCTCTTTCCTCCATAAGCCTTTCGCAGAAGAAGCTCTCCAAGAACCAGTTTCGCTACACGCCCGAGCCTGGCGCCAGAAGAGCCTCGTCTGCGAGGCATGTTCATGATGACGTGGATGTGGATGTGGATGTGGATGCGGATGTGGATGTAGATGCGGATGTGGATGTGGATGCGGATGCGGATGCTGATGTTGCTCTCTATGAAGAAGAGAATTGGGTTTCCTATGATTCCCCGCCGGATTCGTCGCGCAAGAGATCGCGGAGGAGCTTGGATGCTAATGCTACTACTGAATATTCCGATGGAACCTCCGGTTCTTCTGACGACACCGGCGGGCAGACTTGCCATCAGTGCCGGAGGAATGACCGGGAACGTGTTACTTGGTGTCAACGGTGTGACAGAAGGGGATATTGTGATGGCTGTATATCAACATGGTACTCGGACTTTTCACTTGATGAAATTCAGAAGATATGTCCTGCTTGCCGGGGTATATGTAATTGCAAGACTTGCTTGCGGAGTGATAATTCCATTAAGGTTCGGATACGTGAGATTCCTGTTCTAGACAAGTTACAGTATCTCCACGTGCTGCTGTCATCAGTGCTTCCTGTGGTAAAGCAGATCCATCGTGAACAGTGTTTTGAAGTTGAGCTTGAAAAGAAGTTGCGTGGTGCTGAAATAGATCTTCCGAGGATAAAATTGAACTCAGATGAGCAGATGTGCTGCAATTTCTGTAGGATACCTATTACTGATTATCATCGGCGCTGTCCAAGTTGTTCATATGATTTGTGCCTTAATTGCTGCCGAGATCTTCGAGAAGCAACTGCAGATTGCAATAAAGAACCCCAAAGAGAGCAAGCAAAAACTTGTGGTCGAAACATATTAAGTAAATTTCCTCATTGGAGATCCAATGACAATGGAAGTATTCCATGCCCCCCTAAGGATTATGGTGGTTGTGGTCATTCTTCATTAAATTTAAGCCGAATTTTCAAGATGAACTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTAGTGGATGCAGAATTAGTAATGCTGATGGTCCATCCGAAACCGGGCTCAATGATCTAAGACTTTGCCAATATTCTCATAGAGAAACCAGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATATGAAAACTGATGGGATTAGCAAATTTAGAAAGCATTGGAAAACTGGCGAGCCCATTATTGTTAAGCAAGTATTTGATGGGTCATCCATTTCAAGCTGGGATCCAATGGTCATATGGAGAGGGATTCTAGAGACAACTGATGAGAAAGCAAAAGATGAAAAGAGGATGGTTAAGGCAATAGATTGCTTAGATGGGTCTGAGATTGATATTGAGCTTGCTCAGTTCATGAAAGGATACTTTGGAGGACATATTCATGAAAATGGTTGGCCACAGTTATTGAAATTGAAGGATTGGCCTTCACCTAGTGCTTCTGAAGAATTTCTATTGTACCAAAGACCCGAGTTTATCAGCAAACTACCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTCAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAGAATGACGTAGGACCCAAGATATATATATCTCATGGAATTATTGATGAACTTGGTAGAGGTGATTCAGTGACAAATCTCCACTTCAATATGCGTGACATGGTGTACCTTTTGGTTCATACAAATGAAGTAAAGCTGAAGGACTGGCAAGGAACTAAAATTGAAATGATGCAAAAAGGTGAAGTTAATAAGGAATCTGAGGAAAAAGAATCACATGGGGATCTTCAAATATCTTCTAGGGGGAGTTCACCTGATTCATCAGTTGGTACAAAAAGTAGTGGACTGGATATGGATTCAAACCAGAATAAGTCAATTATGGATGAAGGGTTTGAAATTTATTCTAGTGCAGAAGGTAATATGGCTGATTGTAAACTATTGTTCACACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTTTTTCGTCGGCAGGATGTTCCAATATTGACTAAATATTTGAAAATACATTGGAAGGAATTTGGGAAGTCAGATGATCTAGGAAGTGAATTTGTTGCGTGGCCTCTTTATGATGGAGCTATTTTTCTTGACAAACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCTTGGTCATTTGAGCAGAATTTGGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCAATGTTCAGTTGGGACTTGATTTCTTATCTCCGGAAAGCCTGGGTGATGCTGTAAGATTAGCTGAGGAGATTCGCTGTCTACCTAATGAACATGAAGCAAAGCTCCAAGTATTGGAGGTTGGGAAGATATCCCTTTATGCAGCAAGTTCAGCAATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAACTTGGCGCTGAGATTGGATATGGAGACCCACATTTGACTGCAATGGTTTCTGAGAATTACGAGAAGATGGTGAAGCGGAGGCAGATAACTTGTGCTTGAACTTCCACATTTGGTTTCATCATTGAATCCAGAAAGGGGGGATTATGTACATTAGTTGTATTTGAGCAATATTTTATGGATTGGTATTTTCAGTGTAGTTTTGATCAAATACCTAGGGTAATCATTTAAATGTGTATAATAGTTACGTTAGAGAATCATATAATGACAAACTTCAAATCTGTATTTTATTTGAGAATGTGGAAAAGAAACATGTAATATATACAAAGTCA 3336 0.4284 MDHSRSANGEDNASGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSQSMSLGESDNVYLESKSDDFNVPLSSISLSQKKLSKNQFRYTPEPGARRASSARHVHDDVDVDVDVDADVDVDADVDVDADADADVALYEEENWVSYDSPPDSSRKRSRRSLDANATTEYSDGTSGSSDDTGGQTCHQCRRNDRERVTWCQRCDRRGYCDGCISTWYSDFSLDEIQKICPACRGICNCKTCLRSDNSIKVRIREIPVLDKLQYLHVLLSSVLPVVKQIHREQCFEVELEKKLRGAEIDLPRIKLNSDEQMCCNFCRIPITDYHRRCPSCSYDLCLNCCRDLREATADCNKEPQREQAKTCGRNILSKFPHWRSNDNGSIPCPPKDYGGCGHSSLNLSRIFKMNWVAKLVKNVEEMVSGCRISNADGPSETGLNDLRLCQYSHRETSDDNYLYCPTSEDMKTDGISKFRKHWKTGEPIIVKQVFDGSSISSWDPMVIWRGILETTDEKAKDEKRMVKAIDCLDGSEIDIELAQFMKGYFGGHIHENGWPQLLKLKDWPSPSASEEFLLYQRPEFISKLPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISHGIIDELGRGDSVTNLHFNMRDMVYLLVHTNEVKLKDWQGTKIEMMQKGEVNKESEEKESHGDLQISSRGSSPDSSVGTKSSGLDMDSNQNKSIMDEGFEIYSSAEGNMADCKLLFTQNGDVSEKTHPGVLWDVFRRQDVPILTKYLKIHWKEFGKSDDLGSEFVAWPLYDGAIFLDKHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSNVQLGLDFLSPESLGDAVRLAEEIRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKLGAEIGYGDPHLTAMVSENYEKMVKRRQITCA 945
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01145 945 ProSiteProfiles Zinc finger RING-type profile. 206 253 IPR001841 -
Pste4g01145 945 MobiDBLite consensus disorder prediction 163 207 - -
Pste4g01145 945 ProSiteProfiles WRC domain profile. 16 60 IPR014977 -
Pste4g01145 945 MobiDBLite consensus disorder prediction 681 722 - -
Pste4g01145 945 MobiDBLite consensus disorder prediction 107 132 - -
Pste4g01145 945 Pfam WRC 17 57 IPR014977 -
Pste4g01145 945 SMART cupin_9 586 875 IPR003347 -
Pste4g01145 945 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 909 IPR045109 GO:0032454|GO:0033169
Pste4g01145 945 MobiDBLite consensus disorder prediction 697 722 - -
Pste4g01145 945 MobiDBLite consensus disorder prediction 681 696 - -
Pste4g01145 945 SUPERFAMILY Clavaminate synthase-like 486 881 - -
Pste4g01145 945 ProSiteProfiles JmjC domain profile. 579 875 IPR003347 -
Pste4g01145 945 MobiDBLite consensus disorder prediction 184 205 - -
Pste4g01145 945 MobiDBLite consensus disorder prediction 1 23 - -
Pste4g01145 945 Pfam JmjC domain, hydroxylase 809 854 IPR003347 -
Pste4g01145 945 Gene3D Cupin 465 884 - -
Pste4g01145 945 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 199 266 IPR018866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01145 Pste-Chr4 8567911 8576526 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01145 17 57 GRF Transcription Factor Family AT3G13960 46.341 2.52e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Pste4g01145 JmjC 1.7e-06 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01145 4 8567911 8576526 Pste4g01145 4 8567911 8576526 ECH