Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01140 TGGTTCTTGTATTCTTGTGCCAGCAAACACCCTCGTCTCCACACCATAAAAGGAGGAGAGTTTCCTGGTTTTTGTCTTCCTCTATTTTTCTTAACAAAATTCATCTTGCTGCAGCTAGCTATACAGCAGCTGCAACAAGCTGAGTCAAACAAACAAACACTTGGAATATTTTTCAATAGATTCTTCCCTTTGATTTTTCTTTGGCTACCTTCAATGTCAAACATCACAAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAACAGTTAAACAGCAATCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCATGCTTCAACCACAACAACAAATAACAGCAATGTTTCCAACACAAATTCACAACCTCCTGCACCTGTTAAGAAGAAAAGGAGCCTACCGGGAAATCCAGATCCAAGTGCAGAAGTGGTAGCTCTATCACCAAACACACTAATGGCCACAAACAGGTTCATATGTGAAATCTGCAATAAAGGGTTTCAAAGGGACCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACGAGTACAGAAGTTAGAAAGAGGGTTTATGTTTGTCCAGAACCATCGTGTGTTCACCACAACCCAGCAAGAGCACTCGGTGATCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATCTTTTCCAGAAGAGACAGCTTCATTACGCACAGAGCTTTCTGTGACGCACTAGCAGAGGAGAACAACAAAGCCAACGAAGGGCAATTGCCAAAGATAGGTCCAAACTTGCAATGCCAACAAATCCCAAACCTGGTTTCATCATTACCAATCAACACCAACAGCATTGTTCCCAACCCACAGATGGGTGGCACCTCGGAGTTCAACCATGGTGATCACAAGCACCCACTGTCACTCCCGCACGAGCTCATGCCAATGCCTGCAGGAAAACCGTTCAACAACATGGCTGCACCCGGAACCGTTTTCGCCAGAAGCCTCACATCAACCTCTTCCCCCTCTCTTCAACTAAGCTCAAACATGTTCGAGGAAAACGGGCTTCACCTTGCTGCAGGGTCACCACACATGTCAGCCACAGCACTGTTGCAAAAAGCTGCACAAATGGGAGCAACAGTGACAGAAAAAACATTTTCCACGAACATGGCACCACCATCGTTCGGCGTGCTGCAACAACAACAACCAAATAATGGACAATCCTTCATGAACCAATACTTGCACAGTGGGCAGCATGAGGTTAACATTTCTTCTCAGTATAGTAATTTCGGTGGAAATGGGATGGGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATTTTGGATCAAAGCAAGGCTTTGTCGAAGATCATAGAGCAAAACAATAGAAGCAGTAGTGGAGGAGCAACAAATGGAGGTTCCAGTGGTGCTATTAATTGGGGATGTAATGACACTGGACTTTTGGGAATAGGAGGGGTGGTGGGGGTGGTGGCGGTGGTGGAGGAGGAGGAGGAGGTGCACATGGAAACTTGTATGCTGCTGCTCAACCAGGTGAAACTGCTGCAGCGGATGAGGTTTGGAGAAACTGGTCTAGTAAAAACGCAGGGTTTGAATCTTTTTCAGCAACGAGCAGCATTTGAAAGGAAGAATAATAGTCAAAAAGGGTGGAACTTTGAGCTGAATGTGCTTCTTTTTCTT 1833 0.4561 WFLYSCASKHPRLHTIKGGEFPGFCLPLFFLTKFILLQLAIQQLQQAESNKQTLGIFFNRFFPLIFLWLPSMSNITSCDSGSFSTENTREDATVKQQSEMLGQFHSPHSHASTTTTNNSNVSNTNSQPPAPVKKKRSLPGNPDPSAEVVALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNSIVPNPQMGGTSEFNHGDHKHPLSLPHELMPMPAGKPFNNMAAPGTVFARSLTSTSSPSLQLSSNMFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFSTNMAPPSFGVLQQQQPNNGQSFMNQYLHSGQHEVNISSQYSNFGGNGMGGGSVGMNGVDMFNAILDQSKALSKIIEQNNRSSSGGATNGGSSGAINWGCNDTGLLGIGGVVGVVAVVEEEEEVHMETCMLLLNQVKLLQRMRFGETGLVKTQGLNLFQQRAAFERKNNSQKGWNFELNVLLFL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01140 611 Gene3D Classic Zinc Finger 217 296 - -
Pste4g01140 611 SMART c2h2final6 203 233 IPR013087 -
Pste4g01140 611 SMART c2h2final6 162 184 IPR013087 -
Pste4g01140 611 SMART c2h2final6 238 258 IPR013087 -
Pste4g01140 611 ProSitePatterns Zinc finger C2H2 type domain signature. 164 184 IPR013087 -
Pste4g01140 611 FunFam protein indeterminate-domain 5, chloroplastic-like 216 295 - -
Pste4g01140 611 Pfam Zinc-finger double-stranded RNA-binding 162 184 IPR022755 -
Pste4g01140 611 FunFam protein indeterminate-domain 12-like 141 209 - -
Pste4g01140 611 SUPERFAMILY beta-beta-alpha zinc fingers 161 258 IPR036236 -
Pste4g01140 611 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 110 459 IPR031140 -
Pste4g01140 611 MobiDBLite consensus disorder prediction 103 131 - -
Pste4g01140 611 Gene3D Classic Zinc Finger 141 208 - -
Pste4g01140 611 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 184 IPR013087 -
Pste4g01140 611 MobiDBLite consensus disorder prediction 103 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01140 Pste-Chr4 8545576 8549296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01140 120 420 IDZ Gene Family AT3G50700 55.352 1.15e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste4g01140 zf-C2H2_jaz 9.2e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g03109 5 24155899 24160918 Pste4g01140 4 8545576 8549296 ECH
Pste4g01140 4 8545576 8549296 Pste4g01140 4 8545576 8549296 ECH
Pste5g01016 5 6706154 6710228 Pste4g01140 4 8545576 8549296 PCT
Pste5g03109 5 24155899 24160918 Pste4g01140 4 8545576 8549296 PCT