Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01137 CACCGATTTCTCTCTCTCTCTCTTCAACATTCTCTCATATTCTGAAACAACAAAAAGAAAAAGGGAAATTCAAGTTTCTGCAATGGCGGTTTCTTCTGCGAAATGGGTTCTCTTTTTGCTTCTGACGCTGCTCGTTCGAGAAGAAGCCATGGCTATGGCGGCTTCAGCTACTAACAGGAATGTTGAAGTTGAAAGCTTGGTGAACTCATCAATGGCGGAGAGGGCAATAGAGGCTGAGAAATTAAATGATGGTGCTGCAGTGGCAAACCCTGAGGAAGTGGCTTCAATGGTTGAGATGAGCATCCAGAACAACACCGAGAGAAGGAACCTGGGGTTTTTCTCTTGTGGAACTGGTAACCCTATTGATGATTGTTGGCGTTGTGACCCCAACTGGCAACGCAACAGGAAGCGTCTTGCAGATTGTGGCATTGGTTTTGGTAGAAATGCCATTGGTGGTCGTGATGGAAAATTCTATGTGGTGACTGACCCCAGAGATGATGACCCTGTTAACCCCAAACCTGGCACTCTTCGCCATGCTGTGATCCAAGACAGGCCCTTGTGGATTGTGTTCAAGAGGGACATGGTTATTCAGTTGAAACAAGAGCTAATCATGAACAGCTTCAAGACCATTGATGGAAGAGGAGCCAATGTTCACATTGCTAATGGGGCATGCATCACAATCCAGTATGTTACCAATGTCATCATCCATGGCCTACATATTCATGACTGCAAACCCACTGGAAATGCCATGGTGAGAAGCTCCCCCACACACTTTGGGTGGAGGACAATGGCTGATGGAGATGCCATCTCCATATTTGGCTCAAGCCACATTTGGGTTGACCACAATTCTTTGTCTCACTGCGCTGATGGTCTTGTGGATGCTGTCATGGGCTCAACAGCCATAACTATTTCTAACAACCATTTCACCCATCACAATGAGGTGATTCTGCTGGGCCACAGCGACTCTTACACAAGAGACAAGCAAATGCAAGTGACCATCGCATACAACCATTTTGGAGAGGGACTTATCCAGAGAATGCCACGGTGTAGACACGGATACTTCCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGAAGTGCTAACCCCACCATCAACAGCCAGGGCAACCGATACAATGCTCCTACTAACCCTTTTGCCAAGGAGGTGACTAAGAGAGTGGAAACAGCAGCAAGTGAGTGGAAGGGTTGGAATTGGAGGTCAGAGGGAGATTTGTTGCTGAATGGTGCCTATTTCACTCCATCTGGTGCTGGAGCCTCAGCCAGCTATGCCAGGGCCTCTAGCTTAGGAGCAAAATCTTCCTCCATGGTTGGTTCCATGACTTCCAATGCTGGTGCACTCGGTTGCAAAAGAGGCCGTCAGTGCTAGCACATCTCAACCAGCCATGTGAATGAAAAGAGCCATTATTTTTCTTTTGTGTCTGATTCTCAGTTTTTACCATATCATAGTCGAACATCATCATCATATATCCATCCATTGCTTTCCTCAAACCCCCATCATATCCTGCATTCTTGACAAGTGTACATTATTTACACATGTCAATACGGTTTCTGTTACCCCATTACCACATTGTGTGTTTTGTTGTTGGTCAACCTTTGCTGCTCGACTTGCTCCAGCTGAAACAAACAATGCAATTGTAGGAGCAGGTGCAGAAGCGCTATCCATTTTTTTTCCCTTTCCTTTGGTCCTTCCCAGCTCATCTCATCAACCTTACCCGCACCAATTCATATGCATATTTTTCCAAATGTCAAATCATGTCTCCTTACATACTGTTCAGTCTTTTTCAGTTTTATAGGATTTGAATGAGCCCAAATATATATATAAAATATATATATGATTTTTCTTTTGCTCCCCTTTCGTTATTTTTTACTATTTGTTTTGTTGAGTTAATTATACAAGCAAAAGCATGATTGTCAAAGTTGAGTTACATGGAAACACTTTATCAATGGCGATTATGGAATTGTAATAGCTATGGTGTTGCTTTTTAACTTTCTCACCTTTTTATCCTTTTTCCCTTGCCAATGCAAGTAATCTTTGCTTTTTTTATGCAATTATGGTTGTAAATCATTAAACATATCTGCC 2119 0.4346 MAVSSAKWVLFLLLTLLVREEAMAMAASATNRNVEVESLVNSSMAERAIEAEKLNDGAAVANPEEVASMVEMSIQNNTERRNLGFFSCGTGNPIDDCWRCDPNWQRNRKRLADCGIGFGRNAIGGRDGKFYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIQLKQELIMNSFKTIDGRGANVHIANGACITIQYVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVDHNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYNAPTNPFAKEVTKRVETAASEWKGWNWRSEGDLLLNGAYFTPSGAGASASYARASSLGAKSSSMVGSMTSNAGALGCKRGRQC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Pste4g01137 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Pste4g01137 440 SMART amb_all 166 363 IPR002022 -
Pste4g01137 440 SUPERFAMILY Pectin lyase-like 68 434 IPR011050 -
Pste4g01137 440 FunFam Pectate lyase 91 433 - -
Pste4g01137 440 Pfam Pectate lyase 173 355 IPR002022 -
Pste4g01137 440 PANTHER PECTATE LYASE 18-RELATED 63 438 IPR045032 GO:0030570
Pste4g01137 440 Gene3D - 91 433 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01137 Pste-Chr4 8504080 8509598 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01137 35 440 Polysaccharide Lyase AT4G13710 81.995 0.0 724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01137 4 8504080 8509598 Pste4g01137 4 8504080 8509598 ECH