Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01116 CAATGATTAAAAACGATAGTCCTGAGATGGCAAAAGCATGGATCCAACGACGGTTAGGAGTTGTGGAACACTGGGCTGGCACTTGGCAGGGGCGCAAAATTTTACTGCGCAGTGCACTCAATTATCGATCGCAACTTTCATTAACAGTGCCTAGTTTTTCAGTTTCGAGTTTTGATATTTTTTATCGCGAACAAGGTGGAGTTTGGCGAGCATTGGGGACTGCTATGAATTTTGGAGTGGAAATGTTTGGGGCAACCAGAGGGCATGGTAGCGACGGACTTGTGGAGCCCGTTTTGATTACCAAGCGTTTTGTTTGGCCTCATGGAGGAACAAGGGTGTTTCTAACTGGTTCTTTCACGAGATGGTCCGCATTTATACCTATGTCACCGATGGAAGGATGCCCAAATGTATTTCAAGTTATTTTCAGCTTACCGCCCGGATATCATCAGTACAAGTTTAATGTAGATGGTGAGTGGCGGCATGATGAGCATCAACCATTTGAAAGTGGGGACTGTGGGATGGTGAATACTATTTGTTTAGTGAGAGAACCAAATATTTTGCTTCCTATCTTAAGATCTGAAACACCTTCTCGATCCCACATGGAGGTCGACAATGATGTCTTTAGGCACGTGGAAGTTAATCCGAGGATGTCAGAGTCTGATCTTCAGGTCTCTCGAGACCGTATATCTATATTCTTGTCTTCATGTACTGCTTATGAGTTGCGTCCTGAGTCAGGCAAGGTTGTTGCCTTGGATATAACTTTACCAGTTAAACAAGCATTCCATGTTCTTTACCAAGAGGGAATATCTATGGCTCCTGTATGGGATTCTAGTAAGTGCCAGTTTGTTGGAATGCTTAGTGCAATGGACTTCATTCTAATACTAAAAGAGCTGAGGATTCATGGATCAAACTTAACTGAAGAACAACTTGAGACTCATACTATAGCAGCATGGAGAGAGGCAAAGGTACAAGCATGCGGAGCTGATACTAATGGGAGAATATATCCTCAACATTTAGTTCACGCTGGGCCACTTGAGTCTCTAAAAGATGTTGCTTTAAAATTTTTGCAAAACAAGGTGGCAACAGTTCCTATTATCTATTCTTCTCCTGAGGACGGTTCATTTCCTCAGTTGCTACACCTTGCTTCCCTCTCAGAAGTACTAAAATGTATATGCAGGCATTTTAAGCACTCTTCTGATTCCTTACCCATTCTTCAGCTACCAATTGGTACATGGGGGTCAAAAGTGGAAGAACACAATAAACAGCCACTTGCTATGCTAAGGCCAAATGCTTCTCTTAGTGATGCTCTGTCTGTGTTGATTCAAGTTTATGTTATCTTATGGTTGCTGTCCTTTGCAGCTGATGTTAGCTCAATACCAATTGTGGATAATAGTTGTTCATTACTTGATATATATTCAAGAAGTGATATCATTGCATTGGTTAAAGATAGAATGTATGCAAGGATAAGTCTGGATGTGTTTAGTATCCATAAGGCATTGCTTTTGGGACGAGATGCAAGTTTTCCTTATGGGCTTCGTAATGGCCCGAGATGTCATATGTGTTTGAAATCTGATTCATTGCACAAAGTGATGGAGCGCTTGGCAAATCCTGGTGTTAGACGGCTTGTGGTTGTGGAGGCTGGCAGCAGGCGTGTGGAAGGGATCATTTCCATAGGTGACGTGTTCAGATTATTGTTAGGCTAGTAGGGAATATATGGCTACCGTTTTACATGAAGAGAATTCTATGAAAACTTATGCTCCTGCCATCGTGGCTTGCCTATTTTTCCTAGTCTTTGGTTAGATGGGCACCTTCAGTTGTTGTGTCCACGTTGCTTTTATATATAGGATAGAAATTGTAGAGGGAAACAAAGTCTGTAAATTGAGGGATTAGTTTTTTCTCCTTTAAACTTGTTGATATCATGATTTTCTCCTTTGTGCCGGCATAAACGCAATGTTTGTGTCCTGTGCTAATACAAATCAAGGAGAAGGGTAAATATTTAGCCGCATGCGGCACTGGCTGGTTGTAAGTAAAAGGTATTTTGGTTGCATTATGATTCCA 2058 0.4164 MIKNDSPEMAKAWIQRRLGVVEHWAGTWQGRKILLRSALNYRSQLSLTVPSFSVSSFDIFYREQGGVWRALGTAMNFGVEMFGATRGHGSDGLVEPVLITKRFVWPHGGTRVFLTGSFTRWSAFIPMSPMEGCPNVFQVIFSLPPGYHQYKFNVDGEWRHDEHQPFESGDCGMVNTICLVREPNILLPILRSETPSRSHMEVDNDVFRHVEVNPRMSESDLQVSRDRISIFLSSCTAYELRPESGKVVALDITLPVKQAFHVLYQEGISMAPVWDSSKCQFVGMLSAMDFILILKELRIHGSNLTEEQLETHTIAAWREAKVQACGADTNGRIYPQHLVHAGPLESLKDVALKFLQNKVATVPIIYSSPEDGSFPQLLHLASLSEVLKCICRHFKHSSDSLPILQLPIGTWGSKVEEHNKQPLAMLRPNASLSDALSVLIQVYVILWLLSFAADVSSIPIVDNSCSLLDIYSRSDIIALVKDRMYARISLDVFSIHKALLLGRDASFPYGLRNGPRCHMCLKSDSLHKVMERLANPGVRRLVVVEAGSRRVEGIISIGDVFRLLLG 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01116 566 CDD E_set_AMPKbeta_like_N 102 177 - -
Pste4g01116 566 Gene3D - 402 566 IPR046342 -
Pste4g01116 566 Pfam Glycogen recognition site of AMP-activated protein kinase 102 183 IPR032640 -
Pste4g01116 566 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 217 564 - -
Pste4g01116 566 FunFam Sucrose nonfermenting 4-like protein 96 181 - -
Pste4g01116 566 SUPERFAMILY CBS-domain pair 227 396 IPR046342 -
Pste4g01116 566 ProSiteProfiles CBS domain profile. 513 566 IPR000644 -
Pste4g01116 566 SMART cbs_1 246 295 IPR000644 -
Pste4g01116 566 SMART cbs_1 516 565 IPR000644 -
Pste4g01116 566 SMART cbs_1 422 481 IPR000644 -
Pste4g01116 566 ProSiteProfiles CBS domain profile. 240 302 IPR000644 -
Pste4g01116 566 Pfam CBS domain 517 565 IPR000644 -
Pste4g01116 566 Gene3D Immunoglobulins 97 181 IPR013783 -
Pste4g01116 566 SUPERFAMILY E set domains 100 181 IPR014756 -
Pste4g01116 566 SUPERFAMILY CBS-domain pair 414 565 IPR046342 -
Pste4g01116 566 Gene3D - 211 401 IPR046342 -
Pste4g01116 566 ProSiteProfiles CBS domain profile. 418 487 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01116 Pste-Chr4 8395200 8406970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01116 103 191 Protein tyrosine phosphatase (PTP) family AT3G01510 34.066 2.29e-06 48.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01116 4 8395200 8406970 Pste4g01116 4 8395200 8406970 ECH
Pste5g03114 5 24236298 24248989 Pste4g01116 4 8395200 8406970 PCT