Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01056 GTCAGAACAGATCACTCTCATATTTTTTGGTACCTGCCCGTCTTAGATGGATCATCAAGGGCATGGGCATGGCCAAAACCCATCTATGGGGGTTGTTGGAAATGGACCTCAAATTACCTATGGTTCTAATCCATACCAGGGGAGCCATATAACAGGTTCACCTGGAATGGTTGTTGCATCACCTGGGACCATGCAATCCGCTGGTCAGCCAGCTGCAACTCAGCTGGGGCAACATCAACTTGCTTATCAGCACATGCATCAGCAACAACAACAGCAGCTGCAACAGCGGCTCCAAGCATTTTGGGCAAATCAATACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTGGCAAGGATAAAAAAGATTATGAAGGCTGATGAGGATGTTAGAATGATATCAGCAGAGGCACCAGTCATATTTGCAAGGGCATGTGAAATGTTCATACTGGAGTTAACCTTGCGTTCTTGGAATCATACTGAAGAGAACAAAAGGAGAACACTTCAAAAGAATGATATTGCAGCAGCCATCACTAGAACTGATATCTTCGATTTCTTGGTTGACATTGTGCCTCGGGAGGAATTGAAAGATGAAGTCCTTGCATCAATGGCTAGAGGAACTGTGCCTGTTACAGGACCTCCTGAGGCACTTCCTTATTGCTATATGCCACCTCAACATGCACAGCAAGTTGGAGCTGCCGGTGTCATAATGGGTAATAAGCCTGTGATGGACCCATATGTTCAGCAGTCTCATCCCTACAACATGGCACCACAAATGTGGCCACAACCGCCACCACCACCTGAGCAACAACAATCATCTTCAGATCAGTAGCTACTTATTGTTGGAAGCATCTTTCACCCAATTTCATTCTTGTTAATTAGTTTTCCAAGGTTAGAAATTTTGAATTTTATGTTGG 929 0.4446 MDHQGHGHGQNPSMGVVGNGPQITYGSNPYQGSHITGSPGMVVASPGTMQSAGQPAATQLGQHQLAYQHMHQQQQQQLQQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREELKDEVLASMARGTVPVTGPPEALPYCYMPPQHAQQVGAAGVIMGNKPVMDPYVQQSHPYNMAPQMWPQPPPPPEQQQSSSDQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01056 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 68 215 - -
Pste4g01056 265 MobiDBLite consensus disorder prediction 1 31 - -
Pste4g01056 265 MobiDBLite consensus disorder prediction 15 31 - -
Pste4g01056 265 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Pste4g01056 265 MobiDBLite consensus disorder prediction 237 265 - -
Pste4g01056 265 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Pste4g01056 265 Pfam Core histone H2A/H2B/H3/H4 64 166 IPR007125 GO:0003677
Pste4g01056 265 SUPERFAMILY Histone-fold 68 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01056 Pste-Chr4 8162653 8164462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01056 18 259 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.504 1.32e-80 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Pste4g01056 CBFD_NFYB_HMF 6e-18 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01056 4 8162653 8164462 Pste4g01056 4 8162653 8164462 ECH
Pste5g03147 5 24504640 24510522 Pste4g01056 4 8162653 8164462 ECH
Pste5g03147 5 24504640 24510522 Pste4g01056 4 8162653 8164462 PCT