Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g01038 ATGGTGTTCCTCTTGAAGGTGTTGAAGTTGTTTGTTATGTGTTTGCCTGAGGGAGAGAGAGACAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTATTTCCACAATCACAAGACCCCTTTGGTGGTTACGGATCAGTGAATAAGGACTTGTACAACTGCACCTTCTTGGCTGCTACTTCACCCAACTGGGGGGACTATGAACACATCAACATCAACATCAACAAAGAAGACCAAGGTTCTATCTCTACTTTTCTCGATAATGATAATAGTAATAAAAATAATAATAATAATAATCAACCAGACAATTACCCTTATGGAGATTGGACCAGCTCCTCCTCTATCTCTTCTATGTTACCCCACTTCAACGAACTTCAAGACCCCAGCACTACTCAAAACTTAGATACCTTAACCACCACTCGTCCCAAGAGGCGCAGACCCAAAAGCAGAAAGAACAAAGAAGAAATTGAGAACCAAAGAATGACTCACATTGCCGTCGAGCGCAATAGAAGAAAGCAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCAGACTATTATATCCAAAGGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTTAAGGAGCTTGAGCAGAGGCTACATTTTCTTGGTGCTCACAAACAAGGACAGGGCAAATCTGAAGCTGGTGGTGAAACAAACATGCCCTTTTCTGAGTTCTTCACCTTTCCACAGTATTCAATAAGTGGTGCTGCTGGCTCTGATAATTCTGCACCAAAAAGTGAAGAGCTGGGTGAGGTTAAGTGCGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTAAAAATAAGATCCAAGAAGCGCCCCAAGCAGCTCTTGAAGTTAGTCTCTGGATTGCATACCATGCGCCTCACTATCTTGCACCTAAATGTTACTACCATTGGTGAAGTTGTTCTCTACTCCCTCAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCAGTTGATGACATAGCTGCAGCTGTGTATCAGATGCTGGATAGGATTCACAAAGAGGCAATGTTGAATTAAGATCAGACCTTGACCAAATTTACCCCACTTGGTTTTTAGCCTCATGTCAAGACCTTACTTCATGATGGATCATTGTCTCTCGCTATTTTTTCTCTTTCAAGATGTACCTAACTATTGCAACTCTGTTCAGTTCAGCCTTTGTTAATCTACTGATGGTGCCTTGATGTGGGCTCCTTGGAGGAAGTTTTTTGGTTTATTCCTTCTTGTGTATGTCTTTGTAGCTCACGAGCTCCTTTTGATCTCTCTCTCTTTCTTTTCTTTTTTCTTTTTATCTGGGGTAGGGGTGGAGAAGGCTGCGTGGTATGTTGTTCTTGAGACATATTCTAGTGCTTGGTCAATATTGCCTACCTTGCTTTGAAATTGGTAGGTCTTGTCTACCTCTATCATAAGCCAAAGCCAAATTGTCAAGCTGAAATTGAGAACATCTCAAAATAAAATTGAATGAAAATGAGAGCCGAATATTTTTGGCAATTG 1551 0.4165 MVFLLKVLKLFVMCLPEGERDRERAMALEAVVFPQSQDPFGGYGSVNKDLYNCTFLAATSPNWGDYEHINININKEDQGSISTFLDNDNSNKNNNNNNQPDNYPYGDWTSSSSISSMLPHFNELQDPSTTQNLDTLTTTRPKRRRPKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDYYIQRGDQASIIGGAINFVKELEQRLHFLGAHKQGQGKSEAGGETNMPFSEFFTFPQYSISGAAGSDNSAPKSEELGEVKCGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTIGEVVLYSLSVKVEDDCKLGSVDDIAAAVYQMLDRIHKEAMLN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g01038 358 Pfam Helix-loop-helix DNA-binding domain 158 209 IPR011598 GO:0046983
Pste4g01038 358 MobiDBLite consensus disorder prediction 82 137 - -
Pste4g01038 358 Gene3D - 143 222 IPR036638 GO:0046983
Pste4g01038 358 PANTHER MAX DIMERIZATION, MAD 92 355 - -
Pste4g01038 358 MobiDBLite consensus disorder prediction 82 157 - -
Pste4g01038 358 SMART finulus 163 214 IPR011598 GO:0046983
Pste4g01038 358 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 219 IPR036638 GO:0046983
Pste4g01038 358 CDD bHLH_AtFAMA_like 160 229 - -
Pste4g01038 358 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g01038 Pste-Chr4 7997648 7999390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g01038 26 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 47.516 1.65e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste4g01038 HLH 1e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g01038 4 7997648 7999390 Pste4g01038 4 7997648 7999390 ECH
Pste5g03157 5 24705370 24707335 Pste4g01038 4 7997648 7999390 PCT