Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00933 CGTTAATGATTGTTCAATTTGATAGAAAAAGACAGGGGAGTTTAAGAGGTAACGATGATGGGGTTCAAAATCAGTTGAGGAATGAGGATTCAATCACTGTAATTGCTCCAAGGTCTGCTTCTGCTTCGCCGGTTAGAGGCCGTCGATCAAGATCGTTTTCAGGGCTCAGGAGAAGTCGTTCTAGGAGTCAAGATTCTGCTGATGCGGAGAATCCTGGAAATAATTTGTATGTTACAGGCCTGTCCACAAGGATAACTGACAGTGATCTTCGTAAGTATTTTGGTAAAGAAGGAAAGGTTGTGGACTGTCACTTGGTTAAAGATCCTCATTCCAAAGAATCTCGTGGATTTGGTTTTGTCACTATGGAAACTAATGACGATGCTGAGCGCTGTATCAAGTATTTGAACCGATCTGTCTTTGAAGGTCGGCTGATAACTGTGGAAAAGTTCTCCCCTCTACCCATCCCAAACTTCTACTTTTCTGAGAAGCATTGCCTGATGAGTTTTGGCAGCAGGTCTTCTAACCCATCCCTTCAAGACATGAGATCTGCATCGACATCTAATCTCATCAATCAAATTCGAGTATTTGACAGAAGGGTGTTACCCTTTGTTCATTTGCAAAGAGAAGTCGTGGCAGGACTCCAACACCTGGCAAATACTGTGGTCCAAGAGATAAGCGGGGACATGGTGGGAGACGATCTCGTAGTTACTCACCTATGCGACGGCATGATAGAGATCATTATTCAAGAGACCGGCGACGAAGATCTCGATCTCCATACAGCAGCAGGAGGGTGGAAGATTACTCTGACACATATAGGAGGAGGAGAAATTAGTCCTTGTCAGTTGGTGATAGTTGCCGTCTAAGACGATGCAAAAAACCAATGTCCATGGCTCTGTTATAGGACCAATACATAAAATCGTATCCTTTTGTGTGTAAAAATCGTTGTGCAATGTTTAAAAAAAGTTGGTGTCAATTAGGTTGGTGATCCTTGCCTTTTCCTTAGAGAGCATGCATTCTGCAAAACTTGGTTTATTTTCCATCCCATTTATTGGGTTGTTTTTTGATGGTGGAATACCGGAATGTGTATAGTTAATGGTTTGAAACGCTGAAAGAAATCGGGAAGCAACGACCTTGCTCGTTGTTTTGGGTATATGAATTTGCAAGTGTCACTAGCCATATTTGGTAAATTCTGCTGAGTGAAAGATTTTTTATAGATCAGGGCTATAGAATAAGGGTATTTCTTTCTGCATAAAAAAAGTTTCTTGGGACACCTTTTTCTCCATTGCTGAAAATTAAATCCAGAATGTAATTTTTTACGGTGCAGGAAGC 1329 0.4146 MIVQFDRKRQGSLRGNDDGVQNQLRNEDSITVIAPRSASASPVRGRRSRSFSGLRRSRSRSQDSADAENPGNNLYVTGLSTRITDSDLRKYFGKEGKVVDCHLVKDPHSKESRGFGFVTMETNDDAERCIKYLNRSVFEGRLITVEKFSPLPIPNFYFSEKHCLMSFGSRSSNPSLQDMRSASTSNLINQIRVFDRRVLPFVHLQREVVAGLQHLANTVVQEISGDMVGDDLVVTHLCDGMIEIIIQETGDEDLDLHTAAGGWKITLTHIGGGEISPCQLVIVAV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00933 285 SUPERFAMILY RNA-binding domain, RBD 63 152 IPR035979 GO:0003676
Pste4g00933 285 Gene3D - 14 151 IPR012677 -
Pste4g00933 285 SMART rrm1_1 73 146 IPR000504 GO:0003723
Pste4g00933 285 SMART rrm2_1 73 146 IPR003954 GO:0003676
Pste4g00933 285 MobiDBLite consensus disorder prediction 15 36 - -
Pste4g00933 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Pste4g00933 285 CDD RRM_SF 74 146 - -
Pste4g00933 285 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 61 148 - -
Pste4g00933 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 150 IPR000504 GO:0003723
Pste4g00933 285 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00933 Pste-Chr4 7247653 7251493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00933 65 145 Eukaryotic Initiation Factors Gene Family AT4G34110 37.805 5.67e-07 48.9