Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00872 ATGGGGCTGCAAAACCAATTAAACGACGTGTCGTCCGGTTCGATTCCACTGCTGGTGTTGGCGCATATTGCCTCCTGCGTTAACTACCTCCGCTCCATGCTCCTGGCGCTGTTGCAATCCCTTGGTCTGTGCCGATTCCACACCGACCAGATCGTGGACGACAGATTCCTCGCCGCCGTCGGATCGGGCCTCGCCGGACTCATCATGCTCTCCGATCAGCTCACTCTCAACAACCAATTCTTCCACGGCAACGAGGGGCAGGAGGAGCACCCCTGCGTCGTCTGCCAGGCCACCTTCCAGGACGGTGACCAGGTCCGCACGCTCCCCTGCCGCCACGTCTTCCACCGCCGCTGCTTCGACGGCTGGCTCCACCACTACAAGTTCAACTGTCCCCTCTGCCGCTCCCCTCTCTTCTCCGACGACCGCCTCGCCCTCACCCAACGCCGCCTCGGCCAACAACTCATCTCCTGGTTCTCCCTTCACTGA 486 0.6173 MGLQNQLNDVSSGSIPLLVLAHIASCVNYLRSMLLALLQSLGLCRFHTDQIVDDRFLAAVGSGLAGLIMLSDQLTLNNQFFHGNEGQEEHPCVVCQATFQDGDQVRTLPCRHVFHRRCFDGWLHHYKFNCPLCRSPLFSDDRLALTQRRLGQQLISWFSLH 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00872 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 142 IPR013083 -
Pste4g00872 161 ProSiteProfiles Zinc finger RING-type profile. 92 134 IPR001841 -
Pste4g00872 161 SUPERFAMILY RING/U-box 83 140 - -
Pste4g00872 161 PANTHER RING ZINC FINGER PROTEIN-RELATED 75 142 - -
Pste4g00872 161 SMART ring_2 92 133 IPR001841 -
Pste4g00872 161 Pfam Ring finger domain 92 134 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00872 Pste-Chr4 6812109 6812594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00872 1 161 C3H Transcription Factor Family AT1G15100 49.693 4.16e-47 149