Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00854 GAAGAGTGAAGAGAGGAAGGAAGAAAGGAAGGAAGAGGACTCACTTACACTAGTAGATAGCTGAGTGTGGTGAAGCTGTACTATAGCACTGTATCCTCTGTACCATGTGAAGATTCCCATCCTTAAATAATTGGTCCCAGTCTCTGCATGTTTTCACGTGTCCTGCCATCCGGATGCCGTTAATTACACCATCATGAGCATCAGCTACTGCATAGGATTCGAATGGCCCAGTGACAACCAAAACTATTTATTTCTTTTTTTATTTTTTTCTTCCTTTTTTCCAAGTATCATTTTCCACCTCAGTCCCCCTCCCTACCCCTACCACTCACCCCCTCCTGGCGCGTCCTCTTCACTCTCCAATCATGCATGACATGATACAATACACCTTCTTTCCCTCTTGTTCAAGCAATTCATTCATTTCCCCATTCAATACAAACCGGTAATACCATCACGCTCTCATTCGTCTTCATTTTTAGATTCAATTATCCTTTGTGATGTATATACTGGCGCCAATTATTCTCTCTTAAAGCATCTCATTTGTGAGTGTGACACTCATATCCTATGGTTTTTTCACCAGAGGAATTCCATTGCATGATAAAGATGACTTTGGATTTTATTTCTAAATAGGAAAAAGGGTAAAATGCATTGAATATGCCTTTTTATTTTGTAACGTGGTTTGATTGACTTGTTCAAGGAACCACACTTATATTATTATATAGAATATTATCTGTTAGCCAGGGGTGTGAGTTCACTTTCTTCTAAAAGGGTGTGGTGGTGGCCTATCTCTTCCCTTCCATGCAAGGACAAATTCTTTGATAAATGTGAGAGAGAAAGACAGAAATGAGAGAGAGGGGTTGGTGCGTGGTTTGTAAGTTGCTTCTAGCATTTTGCTGATTTTAATTTACAGTGAACACAGGAAAGAAGAGGTAAAGAAGAGAGAAGTGCTAACACAAAACACAAACATGTTCGATGGAGTACCAGACCAGTTCCACCAATTCATAACTCCAAGGACCTCACTACCTCTTCACTTACCTTTCCCTCTCCATGCTTCAGGCACCTTCCCCACCAATTTTGATCCCTATAACCCTTCCCATCAATTGTCACTCCAACCCAACAATCTCTTGCACCCATTACACCACCAACCCTCTACCCACAAAGATGAAGAGAAGGAAGAAAACACCACCATCCCAATGAACTTCGAAATCCAGAGAGATCAAAGGCAACAACTTCCCCAGCTGATTGATCCCTGGACTAACGACGAAGTTCTTGCCCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACATGTCTCAAGGAAGCTAGCAGAGCTTGGATATAAGAGGAGTGCAGAGAAGTGCAAGGAGAAGTTTGAAGAAGAGAGCAGATGTTTCAGCAACAACATTAATTACGGAAAGAATAATAACAACAATTATCGCTTTCTTAGCGAGCTTGAACAGCTTTATCATCAGGGTGGTGGTGATCATCCTGGGCCACTGCAGAAACAAGACAATATGGGCCACCATGCATCGGAAGAAGGGGATTCGAGAAACGTTGACGCATCGGTGACACAACAAAACGACGAGGCACAAGTGAAAAAGACAAAGGAGCGCAAGAGGAAGAGGCCCGATAGGTTTGAGATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCTCAACAAGAAGAGATGCACAACAAACTCCTCGAGGACATGATAAAAAGAGATGAAGAGAAGTTCACAAGAGAGGAAGCTTGGAAGAAACTGGAGATGGAGAAGATGAACAAGGAGCTTGAGATGATGGCACGTGAGCAAGCTATTGCAGGTGATAGACAAGCCAACATTATCCAAATCTTGAACAAATTCTCAGCCACTTCTTCCCCTGCAAGGCTCACCCTCAAGAAGGTAAACAATAGTTCAAACCTAAACACCCACATAACACAAAACCCTAATCCTTCACAACCCACCACACAAAACCCTACCTTAAATGTTGCACAAGACACATTACAAGTGATTCCTTCTACTTCTTCTACTTCAGCTCCGGTTCCACCCCAGAACCCTATTTCTTGTTCTCTAAATAGCCAGAATAATAACACTGATCCTCAAGATACAAATTCCATTTTGATCAATAAAGGGTCATCATCAAACGCTGTGTCGGCCAATGACAAAGACGATGTTGGAAGAAGGTGGCCAAAGGACGAAGTGTTGGCACTGATAAACCTCAGGTGCACTAATGTGAACAACAACGAGGAGAAGGAGGGGAGCAAGGTCCCTCTGTGGGAGAGAATTTCACAAGGGATGTCAGAATTGGGATACAAGAGGAGTTCAAAGAGATGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGGAAAACTAAGGATGTTAATAAGAAAAGGTCCCTTGACTCAAGAACTTGTCCCTATTTTCACCAATTGAGCAGTCTCTATAATCAAGGAAAACTTGTTCCACAATCTGAAAAGTCCGAAAGCCACATGAATAATCCATCTGAGAATCCCGAGCCAGATCAAACCCAACCTGATGAGTCTTCTTCTCAGGTGGGGTCCGGTGGCTTCAGCGTGCAGCACCAGATTGATAATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAATTCATTGATTTTTGTCCATGTTCTGTCACATAATAATAAGTACCACCTCTTTTGTAACTTCTGTGCTTTTGTTTTTTGGTTGATGCTGGCTTTCTTTAATATAGCATATAAATTGATTGTATATTTGAAAAACTTAGAATTTGGCGAGCACCGACAGCTATAGCTAGTTTGAGGAATGAGAA 2863 0.4198 MFDGVPDQFHQFITPRTSLPLHLPFPLHASGTFPTNFDPYNPSHQLSLQPNNLLHPLHHQPSTHKDEEKEENTTIPMNFEIQRDQRQQLPQLIDPWTNDEVLALLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRCFSNNINYGKNNNNNYRFLSELEQLYHQGGGDHPGPLQKQDNMGHHASEEGDSRNVDASVTQQNDEAQVKKTKERKRKRPDRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMIKRDEEKFTREEAWKKLEMEKMNKELEMMAREQAIAGDRQANIIQILNKFSATSSPARLTLKKVNNSSNLNTHITQNPNPSQPTTQNPTLNVAQDTLQVIPSTSSTSAPVPPQNPISCSLNSQNNNTDPQDTNSILINKGSSSNAVSANDKDDVGRRWPKDEVLALINLRCTNVNNNEEKEGSKVPLWERISQGMSELGYKRSSKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNQGKLVPQSEKSESHMNNPSENPEPDQTQPDESSSQVGSGGFSVQHQIDNGGEKTLMQVPSLDFDQF 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00854 572 Pfam Myb/SANT-like DNA-binding domain 416 503 IPR044822 -
Pste4g00854 572 Pfam Myb/SANT-like DNA-binding domain 94 173 IPR044822 -
Pste4g00854 572 CDD GT1 416 482 - -
Pste4g00854 572 SMART sant 414 477 IPR001005 -
Pste4g00854 572 SMART sant 92 149 IPR001005 -
Pste4g00854 572 FunFam Trihelix transcription factor GT-2 96 152 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 362 414 - -
Pste4g00854 572 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Pste4g00854 572 MobiDBLite consensus disorder prediction 362 409 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 511 559 - -
Pste4g00854 572 Coils Coil 247 267 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 329 348 - -
Pste4g00854 572 ProSiteProfiles Myb-like domain profile. 417 475 IPR001005 -
Pste4g00854 572 PANTHER FI21293P1 62 551 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 511 572 - -
Pste4g00854 572 Gene3D - 418 480 - -
Pste4g00854 572 Gene3D - 96 151 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 175 226 - -
Pste4g00854 572 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00854 Pste-Chr4 6660399 6663665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00854 237 507 Trihelix Transcription Factor Family AT1G76880 35.793 2.27e-40 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pste4g00854 Myb_DNA-bind_4 9.9e-19 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00854 4 6660399 6663665 Pste4g00854 4 6660399 6663665 ECH
Pste5g03247 5 25686668 25689330 Pste4g00854 4 6660399 6663665 PCT