Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00850 AGACAACCCACCTTCCAGTCCTACTTTCCCCGGGTCTCTGCTTCTTTTCGCAAAACAGGAAACAAGAGCGTCGTAATAATTACTCTCATCTTGTTTATGGGAAGAAAAAAATATGAGTCTAGTTTTAATTTCACCCACCATGTTCCCTCGTTCACTCACTCTCTCTCTCTCTCTCTCTCTTCTTTTGCATCGTGGCAGAGTAAAAATCTCTCCCTCACGGGACAGTGCTATTAGCCTCAACTCTCTCTCCTTCTTTCTCAACCAAGTTGTTTAATACCAATGCAATCTCTCTCTGGATTTGTCCTTTTCTTTCTCTGAGCGAGAATGGCGAAAGAGCTTCTTCTGCAACTTCGTCTGCTTCTTCTTCTTCCCGAACAACGGTGTCGTTTTGCACCTCCTCTGCCAACCTTCACCTCTTTCTGACTCCTCTTCCTTCTACATTTTCAATCCCTCCGATCCGTTCAACTTCATCTTGCTTCTCCCAACCACCGACTCACTCAACCAGGGGTGGGAATTCTCTCACTGAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGCTCTGCACTTCTTGTTAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCTCGTCAAACCGAGCGCTCTCGTAGGTCTGCACACCTGGAGATGGAGCTGATCTCTAAATTAAGAAACCCATTCATTGTTGAGTACAAAGATTCATGGGTAGAAAAGGGTTGTTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCAGAAGCTATAAAGAAAGCTAACGGTGTTCTGTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAACTTCTTATGGCTCTTGACTACTTGCACATGAACCACATTCTTCACCGCGATGTCAAGTGTTCTAATATCTTCTTGACAAAAGATCATGATATACGTCTTGGTGATTTTGGACTTGCCAAGATGTTGACTTCTGACGATCTGGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGATCTAAATCAGATATTTGGTCCTTGGGATGTTGTATATATGAAATGACAGCACATAAGCCTGCATTCAAAGCATTTGATATACAAGCATTGATTAACAAGATTAACAAGTCCATAGTGGCTCCACTGCCAACAAAATATTCTAGTTCATTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCCAGTGCTTCAGAGCTGCTTGGGCACCCTCATCTTGAACCTTATGTTCTTAAGGTCCATCTCAAAATCAATAGCCCTAGGCGAAGCACATTACCAGTTCATTGGCCAGAATCCAACTACATGAAGAAAACTAGATTTTTGGTGCCAGAAGATGATCCTGTTTCCATCTATAGGGATAAGCGACATTCTTTCTGCAATGATCGGACTCTAAATCCTAGTGTATCTGGAGCTGATCAAGATTCTGTATGCTCTACTCTAGAGATAGATTGTACTCCTGACCCTTTAAATCAAAGATTAGCAGAACTACGTATCAGAGATAGCCATGAAGTGAAGCCAATCCAGAAGCGGGTTGTTTCCAGAACTTCTAGCATAGCTAAGACTCCAAGATTTACTTCCTCAAAGGTCTCTACCAACAAGAAGAAATCTATGGAATCCTCGAAGAATTGTAAGGGGCTTCCTCTTTCACACAACACCACAAAATCTGCTAGTACTAATCGCAGAGCATCATTTCCACTTCCAAAAAGGGGTGGTATTCGGCAGCCTCCTCGCAGGTCTGTCAGTTTGCTTAGTCACGTTTCTTCACCAGATATCTCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCGTTAACTTCATATGAAGATTCTTTGTTCCCTATCAATAAAACATCATGTGCACAAGGTTCCTCTGGCTTCCCATCACACGGAAACCATTCAACTGTGATAGATAAATGCACAGTAGAGGTATATGATAAAGCCTCTAATAGGCCTGGTTGTATGGATGCTTGGCAGGGAATCAAGCAGAGCATGTTAAAGGAAATTGATGGGGATAAAAGTGGTTCCTCTGATCAAAATGCAACTGCAGGTGCTTCAAGTCGCACCTCTTCTGATTTGCGTCGACAATTTGACCCATCATCATTCCAACAAAGAGCTGAAGCTTTAGAAGGCTTGCTTGAATTTAGTGCAAGATTGCTGCAGCAGGCAAGGTATGATGAACTTGGGGTTCTGTTGAAACCTTTTGGGCCTGGAAAGGTTTCCCCAAGGGAAACTGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAACACTTTCAATCAGGAAGAATCCATGTAATTTGCTATTATAGTGTTTACCATAGTCATTTTTAGAGTTCAGTGTTTTTTCTCACACCAGAATTTAGCAAACTGATTTTATTAGGGTGTTATATTTTTTCATTTACCCTTTCCTGTTTCACCTCACTGAATAATGATAACTCAAATTTTCAAACTGATCCATGAAAGCAGATGATAGACATTTTCATTATGCTAATCCTAGTTCCTTTCCATGAAAGGTAGCGAGGGTTGGCGTCTCAAAACCCTTTCTATTTTTATATTTGTTGTTCGCTTTTCTTTGGTTGAATAAACTAAACGTCAGTTAAACTGTTGCAAAACATTGCCAGGTTTTGGCCTTGAGTGGAGACACACGACGTTATCCAGTAAGTGGTTTTGTG 2765 0.4145 MEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNPFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALDYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTAHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSASELLGHPHLEPYVLKVHLKINSPRRSTLPVHWPESNYMKKTRFLVPEDDPVSIYRDKRHSFCNDRTLNPSVSGADQDSVCSTLEIDCTPDPLNQRLAELRIRDSHEVKPIQKRVVSRTSSIAKTPRFTSSKVSTNKKKSMESSKNCKGLPLSHNTTKSASTNRRASFPLPKRGGIRQPPRRSVSLLSHVSSPDISVNSPRIDKMAEFPLTSYEDSLFPINKTSCAQGSSGFPSHGNHSTVIDKCTVEVYDKASNRPGCMDAWQGIKQSMLKEIDGDKSGSSDQNATAGASSRTSSDLRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNQEESM 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00850 617 MobiDBLite consensus disorder prediction 522 552 - -
Pste4g00850 617 MobiDBLite consensus disorder prediction 365 385 - -
Pste4g00850 617 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00850 617 MobiDBLite consensus disorder prediction 394 414 - -
Pste4g00850 617 MobiDBLite consensus disorder prediction 365 441 - -
Pste4g00850 617 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Pste4g00850 617 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00850 617 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 567 - -
Pste4g00850 617 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Pste4g00850 617 MobiDBLite consensus disorder prediction 528 552 - -
Pste4g00850 617 SUPERFAMILY Protein kinase-like (PK-like) 1 302 IPR011009 -
Pste4g00850 617 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pste4g00850 617 CDD STKc_Nek 3 258 - -
Pste4g00850 617 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Pste4g00850 617 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Pste4g00850 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Pste4g00850 617 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00850 Pste-Chr4 6613000 6621529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00850 10 258 MAP Kinase Kinase Kinase AT1G53570 32.283 1.41e-36 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Pste4g00850 Pkinase 9.3e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste4g00850 4 6613000 6621529 Pste4g00850 4 6613000 6621529 ECH
Pste5g03251 5 25716748 25722916 Pste4g00850 4 6613000 6621529 PCT