Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00832 CTTTCCATTTCCCAAATTCTCTGTCTCTGTTTCGCTTTCATAAAAAACTTCACTTTTCCCAACTCCACCTGAGAAAAAGATACCCTTCCCACGCACGCACGCGCTCTGTTTGTTTCTGTTCTGTTGGGTGAGTGTGTGGTTCATGCCTGTGTTGGACGCAGAACAACCAGACAACAACGACATGATTAACTTTGAAGAAACTGAGTTGCGACTCGGCCTCCCTGGCGGGTCTGCCATTGATCATGGTCATGGCGAGTTAACACTCAAGGGCACTGGTGCCAAGAGAGGCTTTTCTGAAACCGCTTCTGTTGATTTGAAGCTTAATCTTTCTTCCACTAATGACTCTGCCTCTGCCTCTGCCTCTGCCTCTGCCTCTGTTTCACCCTCCTCTCTCTCTTCAGACAACACTACCACTGTTGCACCTCCCCCACCTGCCACCGACCCCGCAAAACCACCCGCAAAGGCACAAGTGGTGGGTTGGCCACCAGTTAGGTCATTTAGAAAGAACATAGTGAGCGTTCAAAAGAACAACAACGAAGAGGGTGGGGGGGGAGCAGCTTTCGTGAAGGTGAGCATGGATGGAGCACCATATCTACGGAAGGTGGACATAAAGTTGTACAAGAGCTACCAAGAGCTGTCAGATGCGCTGGCCAAAATGTTCAGCTCATTCACAATTGGCAAATGTGGGTCCCAAGGCGTGAAGGACTTCATGAATGAGACCAAATTGATAGACCTTTTGAACGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTGGGTGATGTGCCCTGGGAGATGTTTGTTGAATCCTGCAAGCGCCTCCGCATAATGAAGGGTTCTGAAGCAATCGGCCTTGCGCCAAGAGCCGTCGAAAAGTACAAGAACAGAAGCTGAAGTCATTTTCGGGTTCCCACAACAATCGGCTCGGCTAGGTTGTTCATCGGCTTCACAAGGAAGCAAATTGACTCGAGCAAAATCGAGTCTAATATAGGAATAAGAGTTTAGTTATTGTTATTATTATTATTATTATTATTATTTTTATTATGTGTCTTTGTCATGTTTTTGTAATGTTGTTATATGTGTATTATATGAATGAGAAAAGAGTTGGAAATTGGTTAGGGACATGAAATAATATAGAAGATGTTCATATGATCCCGTTTTTGTTTCCAAGGAAAAATGTGTGATTTTGTCTATTTAATGAATGATAATGTCAATGTTTCCAGTTTA 1246 0.4446 MPVLDAEQPDNNDMINFEETELRLGLPGGSAIDHGHGELTLKGTGAKRGFSETASVDLKLNLSSTNDSASASASASASVSPSSLSSDNTTTVAPPPPATDPAKPPAKAQVVGWPPVRSFRKNIVSVQKNNNEEGGGGAAFVKVSMDGAPYLRKVDIKLYKSYQELSDALAKMFSSFTIGKCGSQGVKDFMNETKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKYKNRS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00832 256 Pfam AUX/IAA family 19 247 IPR033389 -
Pste4g00832 256 SUPERFAMILY CAD & PB1 domains 133 237 - -
Pste4g00832 256 MobiDBLite consensus disorder prediction 64 109 - -
Pste4g00832 256 MobiDBLite consensus disorder prediction 64 93 - -
Pste4g00832 256 Gene3D - 133 250 - -
Pste4g00832 256 FunFam Auxin-responsive protein 133 248 - -
Pste4g00832 256 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 16 243 IPR003311 GO:0005634|GO:0006355
Pste4g00832 256 ProSiteProfiles PB1 domain profile. 138 238 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00832 Pste-Chr4 6439024 6441665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00832 141 241 B3 DNA Binding Superfamily AT3G61830 33.663 1.82e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Pste4g00832 AUX_IAA 3.9e-84 CL0072