Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste4g00808 CCATGTCGCAACCCAAGGCCAAGAAAACGGCGTCGTCCAAGAAGCCTCTCTCCCACCCTCCCTTCGCCGTGATGATAACGGAGGCGATTACGAGTTTGAAGGAGAGAACTGGTTCGAGCCAATACGCCATAACCAAATTCATCGAAGGGAAGCACAAGGAGTTACCTTCAACCTACAAGAAGCTCGTTCTTGTCCATCTCAAGAAGTCTGTTGCAGCTGGCAAGCTTGTCAAGGTCAAAAACTCCTTCAAGCTTGCTGCACCTCTCAAGCCTGCTGCTCCTGCTCCTGTTCCTAAGAAGCCTAAAGCTGTCACCAAGCCCGCTGCCAAGTCCAAGCCTGTTGCATCAAAGAAGAAGCCTGTTGCCAAGCCCAAGCCCAAGCCCAAAGCTGCCGCCTCAGCTCCCAAGCCCAAGCCCAAGCCCAAGCCTAAGCCCACTAAGGTGCCCGCCAAGAAGGTTGCTGCTAAGCCTGCCAAGAAGACTCCTGTTAAAAAGCCCAAGATCGTCTTGAAGAAACCCAAGAGTGTGAAATCGCCGCCGAAGAAGGCCAAGAAG 554 0.5325 MSQPKAKKTASSKKPLSHPPFAVMITEAITSLKERTGSSQYAITKFIEGKHKELPSTYKKLVLVHLKKSVAAGKLVKVKNSFKLAAPLKPAAPAPVPKKPKAVTKPAAKSKPVASKKKPVAKPKPKPKAAASAPKPKPKPKPKPTKVPAKKVAAKPAKKTPVKKPKIVLKKPKSVKSPPKKAKK 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste4g00808 184 CDD H15 17 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste4g00808 184 SMART h15plus2 15 81 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste4g00808 184 PRINTS Histone H5 signature 133 150 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pste4g00808 184 PRINTS Histone H5 signature 101 115 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pste4g00808 184 PRINTS Histone H5 signature 31 48 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pste4g00808 184 PRINTS Histone H5 signature 4 25 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pste4g00808 184 PRINTS Histone H5 signature 155 174 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Pste4g00808 184 MobiDBLite consensus disorder prediction 86 184 - -
Pste4g00808 184 Pfam linker histone H1 and H5 family 18 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste4g00808 184 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 17 86 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pste4g00808 184 MobiDBLite consensus disorder prediction 139 184 - -
Pste4g00808 184 SUPERFAMILY "Winged helix" DNA-binding domain 14 98 IPR036390 -
Pste4g00808 184 PANTHER HISTONE H1 4 166 - -
Pste4g00808 184 Gene3D - 13 89 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste4g00808 Pste-Chr4 6280165 6280795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste4g00808 8 92 Single Myb Histone (SMH) Gene Family AT5G67580 34.118 2.19e-06 45.1